Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS01475 and LRK54_RS01480 are separated by 176 nucleotidesLRK54_RS01480 and LRK54_RS01485 are separated by 330 nucleotidesLRK54_RS01485 and LRK54_RS01490 are separated by 163 nucleotidesLRK54_RS01490 and LRK54_RS01495 are separated by 104 nucleotides LRK54_RS01475: LRK54_RS01475 - peptide-methionine (S)-S-oxide reductase MsrA, at 319,842 to 320,522 _RS01475 LRK54_RS01480: LRK54_RS01480 - ATP-binding cassette domain-containing protein, at 320,699 to 322,546 _RS01480 LRK54_RS01485: LRK54_RS01485 - hypothetical protein, at 322,877 to 324,109 _RS01485 LRK54_RS01490: LRK54_RS01490 - DNA topoisomerase IV subunit B, at 324,273 to 326,162 _RS01490 LRK54_RS01495: LRK54_RS01495 - sigma-70 family RNA polymerase sigma factor, at 326,267 to 326,824 _RS01495
Group Condition LRK54_RS01475 LRK54_RS01480 LRK54_RS01485 LRK54_RS01490 LRK54_RS01495
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.1 -0.3 -0.4 N.D. -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 -0.4 -0.2 N.D. -0.3
phage 1D-T2 -0.3 -0.2 -0.2 N.D. -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.1 -0.4 -0.2 N.D. -0.1
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM -0.2 -0.5 -0.1 N.D. -0.0
phage 4E-T2 -0.4 +0.0 -0.1 N.D. -0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.0 -0.4 -0.4 N.D. +0.1
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.3 -0.2 -0.1 N.D. +0.1
stress R2A with Nickel (II) chloride 0.3125 mM +0.2 -0.5 -0.2 N.D. -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.4 +0.1 +0.0 N.D. -0.2
stress R2A with Uranyl acetate 2.5 mM -0.2 -0.2 -0.2 N.D. +0.1
carbon source a-Cyclodextrin 20 mM +0.2 +0.2 -0.4 N.D. -0.5
phage 2B-T2 +0.1 -0.4 +0.1 N.D. -0.1
phage 3E-T2 -0.4 -0.1 +0.1 N.D. +0.0
stress R2A with Nickel (II) chloride 0.3125 mM -0.3 -0.2 -0.1 N.D. +0.2
no phage control No phage control -0.2 +0.1 +0.1 N.D. -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.1 -0.3 -0.2 N.D. +0.3
phage 2F-T1 +0.1 -0.2 +0.2 N.D. -0.3
no phage control No phage control -0.1 -0.3 +0.2 N.D. +0.1
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -0.2 +0.0 -0.2 N.D. +0.3
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.5 +0.2 +0.0 N.D. +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.2 -0.2 +0.2 N.D. +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.4 -0.2 -0.1 N.D. -0.1
phage SA-T1 +0.2 -0.1 +0.2 N.D. -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.1 -0.0 +0.3 N.D. +0.2
phage 3E-T1 +0.0 +0.2 +0.2 N.D. -0.1
stress R2A with chromate 0.0048828125 mM +0.5 -0.1 +0.2 N.D. -0.1
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.1 +0.1 +0.3 N.D. -0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.1 +0.1 +0.3 N.D. +0.3
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x +0.3 +0.2 +0.2 N.D. +0.1
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