Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS01355 and LRK54_RS01360 are separated by 98 nucleotidesLRK54_RS01360 and LRK54_RS01365 overlap by 4 nucleotidesLRK54_RS01365 and LRK54_RS01370 are separated by 108 nucleotidesLRK54_RS01370 and LRK54_RS01375 are separated by 157 nucleotides LRK54_RS01355: LRK54_RS01355 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 294,172 to 295,446 _RS01355 LRK54_RS01360: LRK54_RS01360 - heavy metal translocating P-type ATPase, at 295,545 to 298,145 _RS01360 LRK54_RS01365: LRK54_RS01365 - heavy metal-responsive transcriptional regulator, at 298,142 to 298,567 _RS01365 LRK54_RS01370: LRK54_RS01370 - PLP-dependent aminotransferase family protein, at 298,676 to 300,124 _RS01370 LRK54_RS01375: LRK54_RS01375 - hypothetical protein, at 300,282 to 301,079 _RS01375
Group Condition LRK54_RS01355 LRK54_RS01360 LRK54_RS01365 LRK54_RS01370 LRK54_RS01375
stress R2A with copper (II) chloride 0.3125 mM N.D. -1.8 -2.5 +0.1 +0.0
stress R2A with copper (II) chloride 0.3125 mM N.D. -1.6 -1.4 +0.1 +0.1
stress R2A with Nickel (II) chloride 0.3125 mM N.D. -0.2 -1.2 -0.3 -0.4
stress R2A with copper (II) chloride 0.15625 mM N.D. -1.0 -0.9 +0.0 -0.0
stress R2A with copper (II) chloride 0.15625 mM N.D. -0.9 -0.6 -0.0 -0.2
stress R2A with silver chloride 1 mM N.D. -0.2 -0.5 -0.7 -0.2
stress R2A with silver chloride 1 mM N.D. -0.1 -0.7 -0.4 -0.4
stress R2A with m-arsenite 0.078125 mM N.D. -0.4 -0.3 -0.5 -0.4
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM N.D. -0.1 -1.6 +0.2 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. -0.1 -1.5 +0.1 +0.3
stress R2A with Cobalt chloride 0.15625 mM N.D. -0.2 -0.4 +0.0 -0.5
stress R2A with Ferric chloride 1.5625 mM N.D. -0.1 -0.6 -0.3 -0.2
stress R2A_PIPES with Aluminum chloride 1.125 mM N.D. +0.1 -1.1 -0.0 -0.2
stress R2A with lithium chloride 15.625 mM N.D. -0.2 -0.6 -0.3 -0.0
biofilm assay; planktonic sample planktonic; Day1; NLDM; N.D. -0.0 -1.2 +0.1 -0.1
stress R2A with Calcium chloride 125 mM N.D. +0.0 -0.6 -0.4 -0.1
stress R2A with Calcium chloride 125 mM N.D. -0.0 -0.5 -0.3 -0.3
no phage control No phage control N.D. +0.0 -0.7 -0.2 -0.2
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 N.D. +0.1 -0.8 -0.2 -0.2
phage 2B-T2 N.D. -0.1 -0.3 -0.2 -0.4
stress R2A with Cesium chloride 3.90625 mM N.D. -0.2 +0.2 -0.5 -0.4
phage phage 31.1 N.D. -0.3 -0.9 +0.1 +0.3
phage 3E-T2 N.D. -0.1 -0.5 -0.4 +0.1
stress R2A with bismuth(III) chloride 0.03125 mM N.D. -0.1 -0.4 -0.6 +0.2
stress R2A with mercury (II) chloride 0.009765625 mM N.D. -0.1 +0.3 -0.6 -0.2
r2a_control R2A control N.D. -0.2 +0.3 -0.4 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. +0.0 +0.4 -0.0 -0.7
stress R2A with Cesium chloride 3.90625 mM N.D. -0.1 +0.5 -0.4 -0.3
phage 1C-T2 N.D. +0.2 -0.4 +0.1 +0.2
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x N.D. +0.1 +0.4 -0.3 +0.1
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