Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS01125 and LRK54_RS01130 overlap by 10 nucleotidesLRK54_RS01130 and LRK54_RS01135 are separated by 269 nucleotidesLRK54_RS01135 and LRK54_RS01140 are separated by 118 nucleotidesLRK54_RS01140 and LRK54_RS01145 are separated by 174 nucleotides LRK54_RS01125: LRK54_RS01125 - NADH-quinone oxidoreductase subunit B, at 251,590 to 252,147 _RS01125 LRK54_RS01130: LRK54_RS01130 - NADH-quinone oxidoreductase subunit A, at 252,138 to 252,494 _RS01130 LRK54_RS01135: LRK54_RS01135 - PilZ domain-containing protein, at 252,764 to 253,117 _RS01135 LRK54_RS01140: LRK54_RS01140 - EAL domain-containing protein, at 253,236 to 256,079 _RS01140 LRK54_RS01145: LRK54_RS01145 - PIG-L family deacetylase, at 256,254 to 257,246 _RS01145
Group Condition LRK54_RS01125 LRK54_RS01130 LRK54_RS01135 LRK54_RS01140 LRK54_RS01145
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. N.D. +0.9 -0.1 -0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. N.D. +1.0 +0.1 -0.4
stress R2A with bismuth(III) chloride 0.03125 mM N.D. N.D. +0.8 -0.3 +0.6
anaerobic Anaerobic, acetate donor; nitrate electron acceptor N.D. N.D. +1.5 +0.0 -0.3
stress R2A with silver chloride 1 mM N.D. N.D. +1.0 -0.1 +0.4
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM N.D. N.D. +1.3 -0.2 +0.2
stress R2A with Uranyl acetate 2.5 mM N.D. N.D. +1.2 -0.1 +0.3
carbon source D-Glucose 20 mM N.D. N.D. +1.4 +0.1 -0.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM N.D. N.D. +1.4 -0.0 +0.1
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM N.D. N.D. +1.4 +0.0 +0.1
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM N.D. N.D. +1.2 +0.0 +0.4
pH R2A_PIPES pH 4 N.D. N.D. +1.3 +0.1 +0.2
pH R2A_PIPES pH 4 N.D. N.D. +1.3 +0.0 +0.3
stress R2A with Nickel (II) chloride 0.3125 mM N.D. N.D. +0.7 -0.0 +1.0
stress R2A with Ferric chloride 1.5625 mM N.D. N.D. +1.8 -0.2 +0.0
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM N.D. N.D. +1.5 -0.1 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. N.D. +1.6 +0.2 +0.1
anaerobic Anaerobic, acetate donor; nitrate electron acceptor N.D. N.D. +1.9 -0.0 -0.0
stress R2A with Aluminum chloride 3.125 mM N.D. N.D. +1.5 -0.0 +0.4
carbon source a-Cyclodextrin 20 mM N.D. N.D. +1.1 +0.1 +0.7
carbon source Gly-Glu 20 mM N.D. N.D. +1.9 +0.2 -0.1
carbon source Gly-Glu 20 mM N.D. N.D. +1.7 +0.1 +0.2
carbon source D-Trehalose 20 mM N.D. N.D. +1.8 +0.1 +0.1
stress R2A with ammonium iron(II) sulfate 2.5 mM N.D. N.D. +2.2 -0.1 +0.2
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM N.D. N.D. +2.1 +0.0 +0.3
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors N.D. N.D. +2.8 +0.1 -0.2
carbon source acetate 20 mM N.D. N.D. +2.5 +0.1 +0.1
carbon source acetate 20 mM N.D. N.D. +2.2 +0.3 +0.4
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors N.D. N.D. +2.8 +0.1 -0.1
phage phage 31.1 N.D. N.D. +2.8 -0.1 +0.3
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