Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS00710 and LRK54_RS00715 are separated by 95 nucleotidesLRK54_RS00715 and LRK54_RS00720 are separated by 149 nucleotidesLRK54_RS00720 and LRK54_RS00725 are separated by 91 nucleotidesLRK54_RS00725 and LRK54_RS00730 are separated by 157 nucleotides LRK54_RS00710: LRK54_RS00710 - alkyl hydroperoxide reductase subunit F, at 152,472 to 154,082 _RS00710 LRK54_RS00715: LRK54_RS00715 - propionate--CoA ligase, at 154,178 to 156,070 _RS00715 LRK54_RS00720: LRK54_RS00720 - malate dehydrogenase, at 156,220 to 157,206 _RS00720 LRK54_RS00725: LRK54_RS00725 - pyridoxal phosphate-dependent aminotransferase, at 157,298 to 158,497 _RS00725 LRK54_RS00730: LRK54_RS00730 - GlsB/YeaQ/YmgE family stress response membrane protein, at 158,655 to 158,909 _RS00730
Group Condition LRK54_RS00710 LRK54_RS00715 LRK54_RS00720 LRK54_RS00725 LRK54_RS00730
phage 1A-T1 -0.3 -0.2 N.D. -0.3 -0.3
phage 1E-T1 -0.1 -0.1 N.D. -0.5 -0.3
phage 1B-T1 -0.3 -0.3 N.D. -0.3 -0.1
phage S3-T2 -0.3 -0.3 N.D. -0.3 +0.3
carbon source Gly-Glu 20 mM -0.3 +0.2 N.D. -0.4 -0.1
phage S3-T1 -0.3 -0.1 N.D. -0.3 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.3 +0.2 N.D. -0.1 -0.3
pH R2A_PIPES pH 4 -0.3 -0.1 N.D. -0.3 +0.2
pH R2A_PIPES pH 4 -0.4 -0.0 N.D. -0.2 +0.2
pH R2A_PIPES pH 4.25 -0.4 +0.0 N.D. -0.3 +0.3
phage 3B-T1 -0.2 -0.1 N.D. -0.2 +0.3
stress R2A with Chloride 250 mM -0.1 +0.2 N.D. -0.5 +0.1
carbon source a-Cyclodextrin 20 mM -0.5 -0.3 N.D. +0.2 +0.4
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x +0.0 +0.1 N.D. -0.5 +0.3
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.1 +0.1 N.D. +0.4 -0.5
stress R2A with Calcium chloride 250 mM +0.0 +0.2 N.D. -0.3 +0.3
stress R2A with Chloride 250 mM +0.1 +0.2 N.D. -0.4 +0.4
stress R2A with Chloride 250 mM -0.0 +0.4 N.D. -0.4 +0.4
r2a_control R2A control +0.0 +0.3 N.D. +0.3 -0.3
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM -0.1 +0.1 N.D. +0.7 -0.2
stress R2A with bismuth(III) chloride 0.03125 mM -0.0 +0.3 N.D. -0.4 +0.7
stress R2A with m-arsenite 0.0390625 mM -0.1 +0.2 N.D. +0.6 +0.1
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.1 +0.1 N.D. +0.5 +0.1
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.1 +0.2 N.D. +0.6 +0.1
stress R2A with Aluminum chloride 3.125 mM +0.2 +0.2 N.D. +0.4 +0.2
stress R2A with Aluminum chloride 3.125 mM -0.1 +0.3 N.D. +0.5 +0.3
stress R2A with Nickel (II) chloride 0.3125 mM +0.1 -0.2 N.D. +1.2 +0.3
stress R2A with m-arsenite 0.078125 mM -0.1 +0.1 N.D. +1.2 +0.2
stress R2A with m-arsenite 0.078125 mM +0.1 +0.2 N.D. +1.4 +0.1
phage phage 31.1 -0.0 +0.1 N.D. +2.7 -0.3
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