Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS00645 and LRK54_RS00650 are separated by 152 nucleotidesLRK54_RS00650 and LRK54_RS00655 are separated by 136 nucleotidesLRK54_RS00655 and LRK54_RS00660 are separated by 87 nucleotidesLRK54_RS00660 and LRK54_RS00665 are separated by 69 nucleotides LRK54_RS00645: LRK54_RS00645 - S46 family peptidase, at 133,718 to 135,877 _RS00645 LRK54_RS00650: LRK54_RS00650 - L-threonine 3-dehydrogenase, at 136,030 to 137,064 _RS00650 LRK54_RS00655: LRK54_RS00655 - DUF748 domain-containing protein, at 137,201 to 140,857 _RS00655 LRK54_RS00660: LRK54_RS00660 - glycine C-acetyltransferase, at 140,945 to 142,144 _RS00660 LRK54_RS00665: LRK54_RS00665 - rRNA pseudouridine synthase, at 142,214 to 143,002 _RS00665
Group Condition LRK54_RS00645 LRK54_RS00650 LRK54_RS00655 LRK54_RS00660 LRK54_RS00665
carbon source D-Glucosamine Hydrochloride 20 mM +0.0 -1.5 +0.0 -1.4 +0.0
carbon source D-Glucosamine Hydrochloride 20 mM +0.1 -1.5 +0.1 -1.5 +0.1
carbon source L-Glutamic 20 mM +0.0 -0.9 +0.0 -1.0 -0.1
carbon source L-Glutamic 20 mM +0.1 -0.9 -0.1 -0.8 -0.0
carbon source D-Trehalose 20 mM +0.1 -0.9 +0.1 -0.9 +0.0
carbon source NAG 20 mM +0.1 -1.0 +0.1 -0.9 +0.1
stress R2A with Aluminum chloride 3.125 mM +0.0 -0.7 +0.2 -1.0 -0.0
carbon source NAG 20 mM +0.1 -0.9 +0.1 -1.0 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.3 -0.5 -0.1 -0.4 -0.2
carbon source D-Raffinose 20 mM +0.1 -0.4 +0.0 -0.7 -0.2
carbon source D-Trehalose 20 mM +0.1 -0.7 +0.1 -0.7 +0.1
carbon source D-Maltose 20 mM +0.1 -0.6 +0.0 -0.7 +0.1
carbon source D-Raffinose 20 mM +0.1 -0.5 +0.0 -0.7 +0.1
pH R2A_PIPES pH 4 +0.1 -0.5 +0.2 -0.9 +0.1
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -0.2 -0.3 -0.0 -0.6 +0.1
pH R2A_PIPES pH 4 +0.0 -0.6 +0.4 -1.0 +0.2
carbon source D-Glucose 20 mM +0.1 -0.5 +0.1 -0.6 +0.1
carbon source D-Maltose 20 mM +0.1 -0.6 +0.2 -0.7 +0.1
carbon source D-Glucose 20 mM +0.1 -0.5 +0.1 -0.5 +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.2 -0.2 +0.1 -0.8 +0.0
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.0 -0.4 +0.2 -0.5 +0.1
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM +0.2 -0.3 +0.2 -0.6 +0.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.1 -0.5 +0.1 -0.5 +0.3
stress R2A with bismuth(III) chloride 0.03125 mM +0.2 -0.5 +0.5 -0.6 -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.2 -0.4 +0.2 -0.5 +0.2
stress R2A with nitrite 25 mM +0.0 -0.4 +0.2 -0.4 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.0 -0.2 +0.2 -0.6 +0.3
stress R2A with m-arsenite 0.078125 mM +0.1 -0.4 +0.2 -0.5 +0.2
stress R2A with nitrite 25 mM +0.1 -0.4 +0.2 -0.4 +0.2
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.1 +0.3 +0.2 +0.4 +0.3
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