Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS00640 and LRK54_RS00645 are separated by 115 nucleotidesLRK54_RS00645 and LRK54_RS00650 are separated by 152 nucleotidesLRK54_RS00650 and LRK54_RS00655 are separated by 136 nucleotidesLRK54_RS00655 and LRK54_RS00660 are separated by 87 nucleotides LRK54_RS00640: LRK54_RS00640 - S46 family peptidase, at 131,440 to 133,602 _RS00640 LRK54_RS00645: LRK54_RS00645 - S46 family peptidase, at 133,718 to 135,877 _RS00645 LRK54_RS00650: LRK54_RS00650 - L-threonine 3-dehydrogenase, at 136,030 to 137,064 _RS00650 LRK54_RS00655: LRK54_RS00655 - DUF748 domain-containing protein, at 137,201 to 140,857 _RS00655 LRK54_RS00660: LRK54_RS00660 - glycine C-acetyltransferase, at 140,945 to 142,144 _RS00660
Group Condition LRK54_RS00640 LRK54_RS00645 LRK54_RS00650 LRK54_RS00655 LRK54_RS00660
carbon source D-Glucosamine Hydrochloride 20 mM +0.0 +0.0 -1.5 +0.0 -1.4
carbon source D-Glucosamine Hydrochloride 20 mM +0.1 +0.1 -1.5 +0.1 -1.5
carbon source L-Glutamic 20 mM +0.0 +0.0 -0.9 +0.0 -1.0
carbon source L-Glutamic 20 mM +0.0 +0.1 -0.9 -0.1 -0.8
carbon source NAG 20 mM +0.1 +0.1 -1.0 +0.1 -0.9
carbon source NAG 20 mM +0.1 +0.1 -0.9 +0.1 -1.0
carbon source D-Trehalose 20 mM +0.1 +0.1 -0.9 +0.1 -0.9
stress R2A with Aluminum chloride 3.125 mM +0.0 +0.0 -0.7 +0.2 -1.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.1 -0.3 -0.5 -0.1 -0.4
pH R2A_PIPES pH 4 -0.1 +0.0 -0.6 +0.4 -1.0
pH R2A_PIPES pH 4 -0.1 +0.1 -0.5 +0.2 -0.9
stress R2A with Calcium chloride 250 mM -0.4 +0.1 -0.6 +0.1 -0.4
carbon source D-Trehalose 20 mM +0.1 +0.1 -0.7 +0.1 -0.7
carbon source D-Maltose 20 mM +0.2 +0.1 -0.6 +0.0 -0.7
stress R2A with Calcium chloride 125 mM -0.4 -0.0 -0.3 +0.2 -0.5
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -0.2 +0.1 -0.5 +0.1 -0.5
carbon source D-Raffinose 20 mM +0.1 +0.1 -0.5 +0.0 -0.7
carbon source D-Glucose 20 mM +0.1 +0.1 -0.5 +0.1 -0.6
carbon source D-Maltose 20 mM +0.1 +0.1 -0.6 +0.2 -0.7
stress R2A with ammonium iron(II) sulfate 2.5 mM -0.7 +0.0 -0.2 +0.2 -0.3
stress R2A with ammonium iron(II) sulfate 2.5 mM -0.4 +0.0 -0.3 +0.2 -0.4
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.1 +0.2 -0.2 +0.1 -0.8
carbon source D-Raffinose 20 mM +0.1 +0.1 -0.4 +0.0 -0.7
stress R2A with bismuth(III) chloride 0.03125 mM -0.4 +0.2 -0.5 +0.5 -0.6
carbon source D-Glucose 20 mM +0.1 +0.1 -0.5 +0.1 -0.5
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.1 +0.2 -0.4 +0.2 -0.5
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM +0.1 +0.0 -0.3 +0.1 -0.6
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM +0.2 +0.2 -0.3 +0.2 -0.6
stress R2A with m-arsenite 0.078125 mM +0.3 +0.1 -0.4 +0.2 -0.5
stress R2A with Nickel (II) chloride 0.3125 mM -0.5 -0.2 +0.2 +0.2 +0.3
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