Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS00520 and LRK54_RS00525 are separated by 73 nucleotidesLRK54_RS00525 and LRK54_RS00530 are separated by 35 nucleotidesLRK54_RS00530 and LRK54_RS00535 are separated by 118 nucleotidesLRK54_RS00535 and LRK54_RS00540 are separated by 139 nucleotides LRK54_RS00520: LRK54_RS00520 - aminomethyl-transferring glycine dehydrogenase, at 109,106 to 111,976 _RS00520 LRK54_RS00525: LRK54_RS00525 - hypothetical protein, at 112,050 to 112,451 _RS00525 LRK54_RS00530: LRK54_RS00530 - sensor domain-containing diguanylate cyclase, at 112,487 to 113,425 _RS00530 LRK54_RS00535: LRK54_RS00535 - hypothetical protein, at 113,544 to 113,810 _RS00535 LRK54_RS00540: LRK54_RS00540 - hypothetical protein, at 113,950 to 114,114 _RS00540
Group Condition LRK54_RS00520 LRK54_RS00525 LRK54_RS00530 LRK54_RS00535 LRK54_RS00540
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -2.0 -0.5 +0.3 +0.0 N.D.
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -1.5 +0.2 +0.1 -0.4 N.D.
carbon source acetate 20 mM -0.9 -0.7 +0.1 +0.1 N.D.
stress R2A_PIPES with Nickel (II) chloride 424 uM -0.2 -1.3 +0.0 +0.2 N.D.
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -1.6 -0.0 +0.2 +0.1 N.D.
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.5 -0.1 -0.3 -0.4 N.D.
stress R2A with Selective_ion_mix_1 1 X -0.1 -0.6 +0.1 -0.6 N.D.
carbon source Gly-Glu 20 mM -1.2 -0.1 -0.0 +0.1 N.D.
phage 2F-T1 -0.3 -1.0 +0.1 +0.2 N.D.
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -1.0 +0.1 +0.1 -0.3 N.D.
stress R2A with Ferric chloride 1.5625 mM -0.2 -0.2 +0.1 -0.7 N.D.
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.6 +0.2 -0.4 -0.2 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 +0.3 -0.1 -1.2 N.D.
carbon source acetate 20 mM -1.0 -0.3 +0.3 +0.2 N.D.
carbon source pyruvate 20 mM -1.1 +0.3 +0.0 -0.1 N.D.
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.5 -0.7 +0.3 +0.5 N.D.
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -0.4 +0.6 -0.7 +0.1 N.D.
stress R2A with lithium chloride 15.625 mM +0.6 -0.4 -0.1 -0.4 N.D.
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +1.2 -1.1 +0.1 -0.4 N.D.
stress R2A with bismuth(III) chloride 0.03125 mM +0.4 +0.3 +0.3 -1.1 N.D.
carbon source D-Raffinose 20 mM +0.9 -0.4 +0.1 +0.2 N.D.
stress R2A with Nickel (II) chloride 0.3125 mM +1.2 -0.4 +0.3 -0.2 N.D.
phage 4E-T2 -0.1 +0.7 +0.1 +0.5 N.D.
stress R2A with nitrate 250 mM +1.0 +0.3 +0.1 -0.1 N.D.
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM +1.1 +0.2 -0.0 -0.0 N.D.
stress R2A with Aluminum chloride 3.125 mM +1.2 +0.3 +0.1 -0.1 N.D.
stress R2A with nitrite 50 mM +1.0 +0.3 +0.0 +0.2 N.D.
stress R2A with chromate 0.0048828125 mM +0.1 +0.1 +0.1 +1.3 N.D.
phage phage 31.1 +1.1 +0.4 +0.0 +0.1 N.D.
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM +1.9 +0.3 +0.1 +0.1 N.D.
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