Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS00510 and LRK54_RS00515 are separated by 32 nucleotidesLRK54_RS00515 and LRK54_RS00520 are separated by 355 nucleotidesLRK54_RS00520 and LRK54_RS00525 are separated by 73 nucleotidesLRK54_RS00525 and LRK54_RS00530 are separated by 35 nucleotides LRK54_RS00510: LRK54_RS00510 - nuclear transport factor 2 family protein, at 107,513 to 108,301 _RS00510 LRK54_RS00515: LRK54_RS00515 - VOC family protein, at 108,334 to 108,750 _RS00515 LRK54_RS00520: LRK54_RS00520 - aminomethyl-transferring glycine dehydrogenase, at 109,106 to 111,976 _RS00520 LRK54_RS00525: LRK54_RS00525 - hypothetical protein, at 112,050 to 112,451 _RS00525 LRK54_RS00530: LRK54_RS00530 - sensor domain-containing diguanylate cyclase, at 112,487 to 113,425 _RS00530
Group Condition LRK54_RS00510 LRK54_RS00515 LRK54_RS00520 LRK54_RS00525 LRK54_RS00530
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.0 -0.1 -2.0 -0.5 +0.3
phage 2F-T1 -0.1 -0.3 -0.3 -1.0 +0.1
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.3 -0.3 -0.5 -0.1 -0.3
stress R2A_PIPES with Nickel (II) chloride 424 uM +0.1 -0.0 -0.2 -1.3 +0.0
carbon source acetate 20 mM +0.0 +0.1 -0.9 -0.7 +0.1
carbon source Gly-Glu 20 mM -0.1 +0.0 -1.2 -0.1 -0.0
phage 3E-T1 -0.3 -0.4 -0.4 -0.2 -0.2
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -0.1 +0.2 -1.6 -0.0 +0.2
phage 1C-T1 -0.4 -0.3 -0.4 -0.2 -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.1 -0.1 -1.5 +0.2 +0.1
carbon source acetate 20 mM -0.1 -0.3 -1.0 -0.3 +0.3
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.1 +0.1 -0.6 -0.4 -0.2
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.0 +0.1 -0.5 -0.7 +0.3
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -0.2 -0.1 -0.4 +0.6 -0.7
carbon source pyruvate 20 mM -0.0 -0.1 -1.1 +0.3 +0.0
phage 2A-T1 -0.0 -0.2 -0.4 +0.3 -0.4
no stress control no stress control -0.1 +0.3 -0.2 -0.6 +0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.1 -0.3 +1.2 -1.1 +0.1
carbon source D-Raffinose 20 mM -0.0 -0.1 +0.9 -0.4 +0.1
stress R2A with bismuth(III) chloride 0.03125 mM -0.3 -0.3 +0.4 +0.3 +0.3
stress R2A with Calcium chloride 250 mM -0.3 -0.1 +0.9 +0.2 +0.0
stress R2A with Aluminum chloride 3.125 mM -0.1 +0.1 +1.0 -0.1 -0.0
stress R2A with Nickel (II) chloride 0.3125 mM +0.1 -0.1 +1.2 -0.4 +0.3
stress R2A with nitrate 250 mM +0.0 -0.1 +1.0 +0.3 +0.1
stress R2A with nitrite 50 mM +0.1 -0.1 +1.0 +0.3 +0.0
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.4 +0.8 -0.0 -0.4 +0.5
phage phage 31.1 +0.2 -0.3 +1.1 +0.4 +0.0
stress R2A with nitrate 125 mM +0.0 +0.2 +0.4 +0.7 +0.0
stress R2A with Aluminum chloride 3.125 mM -0.1 +0.0 +1.2 +0.3 +0.1
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM -0.0 -0.0 +1.9 +0.3 +0.1
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