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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS00430 and LRK54_RS00435 overlap by 4 nucleotides
LRK54_RS00435 and LRK54_RS00440 are separated by 10 nucleotides
LRK54_RS00440 and LRK54_RS00445 are separated by 145 nucleotides
LRK54_RS00445 and LRK54_RS00450 are separated by 195 nucleotides
LRK54_RS00430: LRK54_RS00430 - NUDIX hydrolase, at 92,793 to 93,278
_RS00430
LRK54_RS00435: LRK54_RS00435 - tRNA 2-thiouridine(34) synthase MnmA, at 93,275 to 94,423
_RS00435
LRK54_RS00440: LRK54_RS00440 - high frequency lysogenization protein HflD, at 94,434 to 95,057
_RS00440
LRK54_RS00445: LRK54_RS00445 - porin, at 95,203 to 96,459
_RS00445
LRK54_RS00450: LRK54_RS00450 - ribonuclease T, at 96,655 to 97,323
_RS00450
Group
Condition
LRK54
_RS00430
LRK54
_RS00435
LRK54
_RS00440
LRK54
_RS00445
LRK54
_RS00450
stress
R2A with arsenate 31.25 mM
-2.8
+0.0
-3.4
-0.2
-0.5
stress
R2A with Aluminum chloride 1.5625 mM
-2.9
-1.8
-2.3
-0.2
+0.4
stress
R2A with nitrite 25 mM
-0.4
-2.2
-3.3
-0.1
-0.5
r2a_control
R2A control
-2.1
-0.3
-3.5
-0.1
-0.3
stress
R2A with Zinc chloride 0.625 mM
-1.1
-0.8
-3.6
-0.1
-0.6
stress
R2A with Aluminum chloride 3.125 mM
-1.6
-0.5
-3.4
-0.1
-0.6
stress
R2A with nitrite 50 mM
-1.4
-1.1
-2.5
-0.1
-1.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-1.1
-0.9
-3.2
-0.0
-0.7
r2a_control
R2A control
-1.5
-0.6
-3.5
-0.0
-0.3
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
-0.8
-0.4
-3.6
-0.1
-0.9
r2a_control
R2A control
-1.4
-0.6
-3.3
-0.1
-0.5
stress
R2A with nitrate 125 mM
-0.9
-0.5
-3.5
-0.1
-0.8
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-2.9
+0.2
-2.7
+0.0
-0.2
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-2.8
-0.2
-2.2
-0.1
-0.3
stress
R2A with Uranyl acetate 2.5 mM
-0.8
-1.4
-3.3
-0.1
+0.1
stress
R2A with nitrite 50 mM
+0.3
-2.0
-3.2
-0.1
-0.5
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-1.4
-0.7
-3.0
-0.0
+0.5
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.7
+0.8
-3.9
-0.1
-0.5
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
+0.7
-0.6
-3.0
-0.1
-1.4
stress
R2A with Zinc chloride 0.625 mM
+0.9
-0.9
-3.6
-0.1
-0.6
stress
R2A with nitrite 25 mM
+1.0
-2.1
-3.3
-0.0
+0.2
stress
R2A with Cesium chloride 3.90625 mM
+1.2
-0.8
-3.2
-0.2
-0.2
stress
R2A with Nickel (II) chloride 0.3125 mM
-1.8
+1.5
-1.8
+0.0
-0.7
stress
R2A with Calcium chloride 125 mM
+1.5
-0.4
-3.1
-0.3
-0.4
r2a_control
R2A control
+0.8
+0.5
-4.0
-0.1
+0.3
stress
R2A with lithium chloride 15.625 mM
+1.2
+0.6
-3.2
-0.0
-1.0
stress
R2A with lithium chloride 15.625 mM
+1.7
+0.6
-2.9
-0.1
-0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+2.2
-0.1
-2.1
+0.3
-0.9
stress
R2A with Selective_ion_mix_1 1 X
-0.5
+0.2
+5.6
-0.1
+0.2
stress
R2A with Selective_ion_mix_1 1 X
+0.0
+0.3
+5.5
-0.2
+0.0
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