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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS00395 and LRK54_RS00400 are separated by 75 nucleotides
LRK54_RS00400 and LRK54_RS00405 are separated by 67 nucleotides
LRK54_RS00405 and LRK54_RS00410 are separated by 156 nucleotides
LRK54_RS00410 and LRK54_RS00415 are separated by 107 nucleotides
LRK54_RS00395: LRK54_RS00395 - prephenate dehydratase, at 86,059 to 87,147
_RS00395
LRK54_RS00400: LRK54_RS00400 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 87,223 to 88,311
_RS00400
LRK54_RS00405: LRK54_RS00405 - FHA domain-containing protein, at 88,379 to 89,140
_RS00405
LRK54_RS00410: LRK54_RS00410 - polyhydroxyalkanoic acid system family protein, at 89,297 to 89,572
_RS00410
LRK54_RS00415: LRK54_RS00415 - translation initiation factor IF-1, at 89,680 to 89,898
_RS00415
Group
Condition
LRK54
_RS00395
LRK54
_RS00400
LRK54
_RS00405
LRK54
_RS00410
LRK54
_RS00415
carbon source
NAG 20 mM
-2.6
-4.0
-0.4
-0.3
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-2.9
-2.2
-1.6
+0.0
N.D.
carbon source
acetate 20 mM
-0.4
-3.0
-1.1
-2.1
N.D.
carbon source
pyruvate 20 mM
-2.1
-3.5
-0.4
-0.4
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-2.1
-2.4
-1.5
-0.3
N.D.
carbon source
pyruvate 20 mM
-2.1
-3.5
-0.5
-0.1
N.D.
stress
R2A with nitrite 50 mM
-1.2
-2.0
-2.6
-0.3
N.D.
carbon source
D-Glucose 20 mM
-2.1
-3.3
-0.5
+0.0
N.D.
stress
R2A with nitrite 25 mM
-1.0
-1.8
-2.8
-0.3
N.D.
carbon source
acetate 20 mM
-1.1
-3.4
-1.0
-0.2
N.D.
carbon source
NAG 20 mM
-2.1
-3.3
+0.1
-0.3
N.D.
carbon source
L-Glutamic 20 mM
-1.3
-3.1
-0.6
-0.6
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
-2.4
-2.4
-1.0
+0.2
N.D.
carbon source
D-Trehalose 20 mM
-1.5
-3.5
-0.1
-0.4
N.D.
carbon source
D-Glucose 20 mM
-1.0
-3.6
-0.5
-0.2
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
-1.8
-2.1
-1.2
-0.3
N.D.
carbon source
D-Maltose 20 mM
-1.4
-3.8
+0.0
-0.1
N.D.
carbon source
D-Maltose 20 mM
-1.5
-3.2
-0.1
-0.4
N.D.
stress
R2A with m-arsenite 0.078125 mM
-1.2
-2.1
-1.4
-0.4
N.D.
carbon source
D-Glucosamine Hydrochloride 20 mM
-1.6
-3.1
-0.0
-0.4
N.D.
stress
R2A with Uranyl acetate 2.5 mM
-1.4
-0.5
-2.7
-0.3
N.D.
carbon source
D-Trehalose 20 mM
-1.4
-3.1
-0.1
-0.3
N.D.
stress
R2A with m-arsenite 0.078125 mM
-0.7
-2.1
-1.8
-0.2
N.D.
stress
R2A with nitrate 250 mM
-1.7
-1.0
-2.4
+0.2
N.D.
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.2
-1.8
-1.6
-1.6
N.D.
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-1.2
-0.7
-1.7
-1.1
N.D.
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
-1.5
-1.6
-1.9
+0.4
N.D.
stress
R2A with nitrite 25 mM
-0.4
-1.8
-2.5
+0.6
N.D.
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+1.0
+1.2
-2.5
-0.4
N.D.
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+2.2
+1.6
-1.4
-0.5
N.D.
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