Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS00215 and LRK54_RS00220 are separated by 298 nucleotidesLRK54_RS00220 and LRK54_RS00225 are separated by 162 nucleotidesLRK54_RS00225 and LRK54_RS00230 are separated by 13 nucleotidesLRK54_RS00230 and LRK54_RS00235 are separated by 51 nucleotides LRK54_RS00215: LRK54_RS00215 - hypothetical protein, at 50,994 to 51,251 _RS00215 LRK54_RS00220: LRK54_RS00220 - DUF3309 domain-containing protein, at 51,550 to 51,702 _RS00220 LRK54_RS00225: LRK54_RS00225 - UdgX family uracil-DNA binding protein, at 51,865 to 52,378 _RS00225 LRK54_RS00230: LRK54_RS00230 - DNA topoisomerase IB, at 52,392 to 52,661 _RS00230 LRK54_RS00235: LRK54_RS00235 - error-prone DNA polymerase, at 52,713 to 55,793 _RS00235
Group Condition LRK54_RS00215 LRK54_RS00220 LRK54_RS00225 LRK54_RS00230 LRK54_RS00235
stress R2A with bismuth(III) chloride 0.03125 mM -0.5 -0.6 -0.3 -0.4 +0.1
no phage control No phage control -0.2 -0.8 -0.0 -0.4 -0.1
stress R2A with Selective_ion_mix_1 1 X -0.2 -0.6 +0.1 -0.7 -0.1
phage S3-T1 -0.2 -0.2 -0.3 -0.5 -0.2
stress R2A with Cobalt chloride 0.15625 mM +0.0 -0.8 -0.2 -0.2 -0.2
phage 2F-T2 -0.0 -0.4 -0.3 -0.1 -0.4
phage 2B-T2 -0.0 -0.7 -0.3 -0.0 -0.2
phage 2A-T1 +0.0 -0.4 -0.2 -0.3 -0.3
stress R2A with Calcium chloride 250 mM -0.4 -0.3 +0.1 -0.4 -0.0
pH R2A pH7 -0.2 -0.6 +0.1 -0.3 +0.0
phage 2E-T2 +0.1 -0.3 -0.1 -0.5 -0.3
stress R2A with chromate 0.0048828125 mM -0.3 -0.5 +0.1 -0.0 -0.2
stress R2A with ammonium iron(II) sulfate 2.5 mM -0.4 -0.3 +0.2 -0.4 +0.1
stress R2A with sodium bromide 250 mM -0.5 -0.5 +0.2 -0.1 +0.1
stress R2A with Chloride 250 mM -0.6 -0.5 +0.3 -0.2 +0.1
stress R2A with ammonium iron(II) sulfate 2.5 mM -0.4 -0.4 +0.2 -0.3 +0.1
stress R2A with Chloride 250 mM -0.5 -0.2 +0.3 -0.3 +0.1
phage phage 31.1 -0.2 -0.5 +0.2 -0.2 +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.4 -0.7 +0.3 +0.3 +0.1
stress R2A with silver chloride 1 mM -0.4 -0.7 +0.3 +0.1 +0.1
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.1 -0.5 -0.2 +0.4 -0.0
stress R2A with silver chloride 1 mM -0.4 -0.2 +0.4 +0.2 +0.1
phage 1C-T2 +0.5 -0.5 +0.0 +0.3 -0.1
phage 3E-T2 -0.1 +0.6 -0.4 +0.3 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.3 +0.7 +0.1 +0.1 +0.0
phage 4B-T1 +0.1 +0.7 +0.1 -0.3 +0.1
phage 4E-T2 -0.2 +0.4 -0.1 +0.6 +0.1
stress R2A_PIPES with Nickel (II) chloride 424 uM -0.4 +0.7 +0.1 +0.2 +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.1 +0.7 -0.1 +0.2 +0.3
carbon source a-Cyclodextrin 20 mM +0.2 +1.0 +0.1 +0.1 +0.1
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