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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS00205 and LRK54_RS00210 are separated by 144 nucleotides
LRK54_RS00210 and LRK54_RS00215 are separated by 53 nucleotides
LRK54_RS00215 and LRK54_RS00220 are separated by 298 nucleotides
LRK54_RS00220 and LRK54_RS00225 are separated by 162 nucleotides
LRK54_RS00205: LRK54_RS00205 - DNA-binding protein, at 49,441 to 50,331
_RS00205
LRK54_RS00210: LRK54_RS00210 - cyclin-dependent kinase inhibitor 3 family protein, at 50,476 to 50,940
_RS00210
LRK54_RS00215: LRK54_RS00215 - hypothetical protein, at 50,994 to 51,251
_RS00215
LRK54_RS00220: LRK54_RS00220 - DUF3309 domain-containing protein, at 51,550 to 51,702
_RS00220
LRK54_RS00225: LRK54_RS00225 - UdgX family uracil-DNA binding protein, at 51,865 to 52,378
_RS00225
Group
Condition
LRK54
_RS00205
LRK54
_RS00210
LRK54
_RS00215
LRK54
_RS00220
LRK54
_RS00225
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.4
-0.1
-0.5
-0.6
-0.3
phage
2B-T2
+0.1
-0.3
-0.0
-0.7
-0.3
phage
2A-T1
-0.3
-0.4
+0.0
-0.4
-0.2
r2a_control
R2A control
-0.1
-0.2
-0.5
-0.4
-0.1
phage
1C-T1
-0.4
-0.3
+0.0
-0.3
-0.2
phage
2F-T1
-0.0
-0.3
-0.2
-0.5
-0.1
stress
R2A with Cobalt chloride 0.15625 mM
-0.1
+0.0
+0.0
-0.8
-0.2
stress
R2A with Selective_ion_mix_1 1 X
-0.3
-0.1
-0.2
-0.6
+0.1
stress
R2A with chromate 0.0048828125 mM
-0.2
-0.1
-0.3
-0.5
+0.1
no phage control
No phage control
+0.1
-0.1
-0.2
-0.8
-0.0
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.0
+0.0
-0.4
-0.7
+0.3
stress
R2A with sulfate 250 mM
+0.0
-0.2
-0.5
-0.3
+0.1
stress
R2A with Cesium chloride 3.90625 mM
-0.2
-0.1
-0.7
-0.1
+0.3
r2a_control
R2A control
-0.1
-0.1
-0.3
-0.5
+0.2
stress
R2A with sodium bromide 250 mM
+0.1
-0.0
-0.5
-0.5
+0.2
stress
R2A with Chloride 250 mM
+0.1
+0.0
-0.6
-0.5
+0.3
phage
phage 31.1
+0.0
-0.3
-0.2
-0.5
+0.2
stress
R2A with Chloride 250 mM
-0.1
-0.2
-0.5
-0.2
+0.3
stress
R2A with silver chloride 1 mM
+0.1
-0.0
-0.4
-0.7
+0.3
stress
R2A with silver chloride 1 mM
-0.3
-0.0
-0.4
-0.2
+0.4
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.0
-0.1
-0.4
-0.3
+0.3
phage
1D-T2
-0.2
-0.3
-0.1
+0.4
-0.1
stress
R2A with ammonium iron(II) sulfate 2.5 mM
+0.1
+0.0
-0.4
-0.4
+0.2
phage
3E-T2
-0.1
-0.2
-0.1
+0.6
-0.4
phage
1C-T2
-0.1
-0.1
+0.5
-0.5
+0.0
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.2
+0.4
+0.1
-0.5
-0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.2
+0.2
-0.0
+0.5
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.0
-0.1
-0.3
+0.7
+0.1
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.1
+0.0
-0.4
+0.7
+0.1
carbon source
a-Cyclodextrin 20 mM
-0.4
-0.1
+0.2
+1.0
+0.1
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