Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_21635 and IAI47_21640 overlap by 4 nucleotidesIAI47_21640 and IAI47_21645 are separated by 36 nucleotidesIAI47_21645 and IAI47_21650 are separated by 143 nucleotidesIAI47_21650 and IAI47_21655 are separated by 104 nucleotides IAI47_21635: IAI47_21635 - hypothetical protein, at 71,878 to 72,657 _21635 IAI47_21640: IAI47_21640 - sigma-70 family RNA polymerase sigma factor, at 72,654 to 73,154 _21640 IAI47_21645: IAI47_21645 - tetratricopeptide repeat protein, at 73,191 to 73,727 _21645 IAI47_21650: IAI47_21650 - Gfo/Idh/MocA family oxidoreductase, at 73,871 to 74,884 _21650 IAI47_21655: IAI47_21655 - LacI family DNA-binding transcriptional regulator, at 74,989 to 75,114 _21655
Group Condition IAI47_21635 IAI47_21640 IAI47_21645 IAI47_21650 IAI47_21655
nitrogen source nitrogen source nitrate 20mM -0.7 -0.2 -0.1 +0.0 -2.9
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 +0.5 -0.1 +0.2 +0.1 -4.6
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.0 -0.1 +0.5 -0.0 -4.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 +0.2 +0.1 +0.0 -4.1
stress Uranyl Acetate Dihydrate 200 uM, anaerobic -0.1 -0.2 +0.1 +0.2 -3.8
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.6 +0.1 -0.1 -2.9
no stress control Defined media control, anaerobic -0.8 -0.1 -0.3 -0.4 -2.0
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 +0.1 -0.2 +0.2 -4.0
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.1 +0.0 -0.0 -2.6
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.1 -0.0 -0.1 -2.9
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.7 +0.4 +0.2 +0.1 -4.4
stress Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic -0.5 -0.4 +0.2 -0.2 -2.0
stress copper (II) chloride 5 uM, aerobic -0.1 -0.1 +0.2 -0.1 -2.6
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.4 +0.3 +0.1 -2.5
nitrogen source nitrogen source nitrate 20mM -0.3 +0.1 +0.3 -0.1 -2.5
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 -0.2 +0.4 +0.1 -2.5
stress Aluminum potassium sulfate dodecahydrate 1 mM, aerobic -0.4 +0.3 +0.3 -0.2 -1.9
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 +0.5 +0.3 +0.2 +0.3 -1.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.4 +0.3 +0.2 +0.4 -2.6
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.8 +0.3 +0.3 +0.1 -1.6
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.3 +0.1 +0.4 +0.6 -1.8
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 +0.6 +0.6 +0.3 +0.4 -1.3
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.1 +0.6 +0.3 +0.4 -1.6
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.0 +0.3 +0.3 +0.4 -1.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.2 +0.3 +0.2 +0.5 -0.9
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.4 +0.4 +0.6 +0.4 -0.9
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.9 +0.3 +0.4 +0.4 -0.8
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.6 -0.3 +0.3 +0.2 +1.8
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.4 +0.7 +0.4 +0.4 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.5 +0.7 +0.3 +0.4 +0.2
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IAI47_21635
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IAI47_21640
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IAI47_21650
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IAI47_21655
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