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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_21035 and IAI47_21040 are separated by 464 nucleotides
IAI47_21040 and IAI47_21045 are separated by 100 nucleotides
IAI47_21045 and IAI47_21050 are separated by 234 nucleotides
IAI47_21050 and IAI47_21055 are separated by 515 nucleotides
IAI47_21035: IAI47_21035 - TetR/AcrR family transcriptional regulator, at 452,138 to 452,701
_21035
IAI47_21040: IAI47_21040 - LysR family transcriptional regulator, at 453,166 to 454,044
_21040
IAI47_21045: IAI47_21045 - nitrilase family protein, at 454,145 to 455,119
_21045
IAI47_21050: IAI47_21050 - beta-lactamase family protein, at 455,354 to 456,424
_21050
IAI47_21055: IAI47_21055 - MFS transporter, at 456,940 to 458,289
_21055
Group
Condition
IAI47
_21035
IAI47
_21040
IAI47
_21045
IAI47
_21050
IAI47
_21055
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.2
+0.0
+0.0
-0.2
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.4
-0.3
+0.1
-0.5
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.9
-0.1
+0.0
+0.1
-0.1
nitrogen source
nitrogen source Ammonium chloride 20mM
-1.8
-0.1
+0.1
-0.0
+0.1
stress
copper (II) chloride 5 uM, aerobic
-1.8
+0.1
+0.0
-0.2
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.4
+0.1
+0.2
-0.4
-0.1
no stress control
Defined media control, aerobic
-1.9
-0.1
+0.0
+0.2
+0.1
stress
Cobalt chloride 10 uM, anaerobic
-1.7
-0.0
+0.2
+0.1
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.0
-0.1
-0.1
-0.8
-0.5
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+1.8
-0.2
-0.2
-0.7
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+1.5
-0.0
-0.1
-0.6
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.9
+0.0
-0.2
-0.7
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.5
+0.2
+0.0
-0.3
-0.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.7
+0.0
-0.0
-0.5
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
+1.9
-0.0
-0.2
-0.6
+0.0
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.7
+0.0
-0.0
+0.0
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+2.1
-0.1
-0.1
-0.2
-0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.4
-0.1
+0.3
+0.1
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.9
-0.1
+0.1
-0.1
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+2.7
-0.1
-0.2
-0.4
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.9
+0.2
+0.2
-0.1
-0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+2.0
-0.0
+0.2
-0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+2.2
-0.0
+0.1
+0.1
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+2.6
-0.0
-0.1
-0.0
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+2.6
-0.0
+0.3
-0.3
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+2.5
-0.0
+0.0
-0.2
+0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+2.6
-0.0
+0.2
-0.3
-0.0
stress
copper (II) chloride 2 uM, anaerobic
+1.8
+0.0
+0.2
+0.6
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+2.6
-0.1
+0.3
+0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+2.1
+0.1
+0.3
+0.7
-0.2
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IAI47_21045
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