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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_20635 and IAI47_20640 are separated by 27 nucleotides
IAI47_20640 and IAI47_20645 are separated by 165 nucleotides
IAI47_20645 and IAI47_20650 are separated by 219 nucleotides
IAI47_20650 and IAI47_20655 are separated by 9 nucleotides
IAI47_20635: IAI47_20635 - pirin family protein, at 377,885 to 378,562
_20635
IAI47_20640: IAI47_20640 - hypothetical protein, at 378,590 to 378,817
_20640
IAI47_20645: IAI47_20645 - YtfJ family protein, at 378,983 to 379,513
_20645
IAI47_20650: IAI47_20650 - polyprenyl synthetase family protein, at 379,733 to 380,641
_20650
IAI47_20655: IAI47_20655 - glycosyltransferase family 1 protein, at 380,651 to 381,946
_20655
Group
Condition
IAI47
_20635
IAI47
_20640
IAI47
_20645
IAI47
_20650
IAI47
_20655
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-1.0
-0.1
-0.5
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.1
-0.7
-1.0
-0.4
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.6
+0.0
+0.1
-0.9
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
-0.4
-0.1
-0.8
-0.3
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.0
-0.9
-0.2
-0.2
+0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
-0.5
-0.3
+0.3
-0.4
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.8
-0.3
+0.7
-0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.3
+0.4
-0.9
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
-0.5
+0.1
+0.4
-0.6
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.0
-0.9
+0.5
+0.2
-0.6
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.3
+0.2
-0.8
+0.3
stress
copper (II) chloride 2 uM, anaerobic
+0.2
-0.3
-0.8
+1.0
-0.4
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.3
+0.3
-1.1
+0.3
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
+0.5
+0.1
-0.5
-0.2
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.4
+0.2
-0.6
+0.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.3
+0.4
+0.5
-0.4
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.4
-0.3
-0.5
+0.4
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
+0.2
+0.2
-1.0
+0.5
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.0
-0.9
+0.5
+0.1
+0.3
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
-0.5
+0.4
-0.1
-0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.2
-0.4
-0.4
+0.9
stress
copper (II) chloride 2 uM, anaerobic
+0.2
-0.6
-0.3
+0.4
+1.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.5
+0.1
+0.4
+0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.3
+0.4
-0.5
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
+0.5
-0.1
+0.6
-0.3
stress
Uranyl Acetate Dihydrate 200 uM, aerobic
+0.2
+0.5
+0.1
+0.7
-0.5
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
-0.1
-0.3
+0.4
+0.8
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
+0.8
+0.6
-0.2
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
+0.2
+0.1
+0.6
+0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
+0.5
+0.3
+0.8
+0.0
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IAI47_20645
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