Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_20200 and IAI47_20205 overlap by 16 nucleotidesIAI47_20205 and IAI47_20210 are separated by 36 nucleotidesIAI47_20210 and IAI47_20215 are separated by 622 nucleotidesIAI47_20215 and IAI47_20220 overlap by 95 nucleotides IAI47_20200: IAI47_20200 - 2OG-Fe(II) oxygenase, at 274,153 to 274,926 _20200 IAI47_20205: IAI47_20205 - DUF2817 domain-containing protein, at 274,911 to 275,996 _20205 IAI47_20210: IAI47_20210 - ABC transporter substrate-binding protein, at 276,033 to 276,803 _20210 IAI47_20215: IAI47_20215 - helix-turn-helix transcriptional regulator, at 277,426 to 278,463 _20215 IAI47_20220: IAI47_20220 - alpha/beta fold hydrolase, at 278,369 to 279,463 _20220
Group Condition IAI47_20200 IAI47_20205 IAI47_20210 IAI47_20215 IAI47_20220
stress copper (II) chloride 2 uM, anaerobic -0.6 -0.3 -0.1 +0.0 -0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.3 -0.4 -0.4 -0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 -0.3 -0.3 -0.0 -0.3 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 -0.0 +0.0 -0.4 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 +0.3 +0.2 -0.8 -0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 -0.4 +0.0 +0.1 -0.5 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 +0.1 +0.1 -0.6 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 -0.2 +0.0 -0.2 -0.5 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.0 +0.0 -0.1 -0.6 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 -0.6 +0.1 -0.2 -0.1 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.1 +0.1 -0.2 -0.4
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.2 +0.2 -0.4 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 +0.1 +0.2 -0.4 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.0 +0.3 -0.4 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 +0.2 +0.2 -0.1 -0.3
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 -0.2 -0.0 +0.3 -0.1
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 -0.1 -0.5 +0.1 +0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.3 -0.1 +0.2 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 -0.3 +0.3 -0.0 +0.1 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 -0.3 +0.3 +0.2 -0.2 -0.1
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 -0.0 -0.4 +0.1 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.5 +0.3 +0.5 -0.3 -0.1
no stress control Defined media control, aerobic -0.4 +0.2 +0.3 +0.1 +0.1
stress copper (II) chloride 2 uM, anaerobic -0.2 +0.0 +0.6 +0.3 -0.5
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 -0.2 +0.4 +0.0 +0.3
carbon source Ying_all64 rep A; time point 2 +0.4 -0.1 +0.2 -0.2 +0.2
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 -0.1 +0.6 -0.2 -0.1
stress copper (II) chloride 2 uM, anaerobic +0.3 +0.3 +0.0 +0.2 -0.3
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.5 +0.0 +0.2 +0.2 +0.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 +0.0 +0.5 +0.5 +0.1
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IAI47_20200
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IAI47_20205
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IAI47_20215
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IAI47_20220
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