Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_19585 and IAI47_19590 are separated by 33 nucleotidesIAI47_19590 and IAI47_19595 are separated by 23 nucleotidesIAI47_19595 and IAI47_19600 overlap by 4 nucleotidesIAI47_19600 and IAI47_19605 overlap by 4 nucleotides IAI47_19585: IAI47_19585 - EAL domain-containing protein, at 146,121 to 147,893 _19585 IAI47_19590: IAI47_19590 - ABC transporter substrate-binding protein, at 147,927 to 148,862 _19590 IAI47_19595: IAI47_19595 - ABC transporter permease, at 148,886 to 149,641 _19595 IAI47_19600: IAI47_19600 - ABC transporter ATP-binding protein, at 149,638 to 150,378 _19600 IAI47_19605: IAI47_19605 - thiaminase II, at 150,375 to 151,076 _19605
Group Condition IAI47_19585 IAI47_19590 IAI47_19595 IAI47_19600 IAI47_19605
stress copper (II) chloride 2 uM, anaerobic +0.1 -0.3 -0.8 -1.0 -0.4
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -0.4 +0.1 -1.0 -0.3
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 -0.0 -0.5 -0.8 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.3 -0.0 -0.8 -0.3
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.3 -0.4 -0.9 -0.7
carbon source Ying_sugar7 rep C; time point 2 -0.2 +0.3 -0.2 -1.0 -0.3
carbon source Ying_all64 rep C; time point 2 -0.3 -0.1 +0.1 -0.8 -0.2
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.1 -0.9 +0.3 -0.2
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.1 -0.4 +0.2 -0.7
stress Manganese (II) chloride tetrahydrate 50 uM, anaerobic +0.1 -0.2 +0.5 -1.2 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 +0.2 -0.1 +0.0 -1.1 +0.1
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 -0.2 -0.4 -0.6 +0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.0 -0.2 -0.9 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.4 -0.3 -0.6 -0.4 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.1 +0.2 -0.9 +0.3
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.0 -0.3 +0.4 -0.6 +0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.2 -0.7 +0.4 -0.2
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.1 +0.4 -0.8 +0.2
stress copper (II) chloride 2 uM, anaerobic +0.3 -0.3 +0.5 -0.7 -0.1
stress copper (II) chloride 2 uM, anaerobic -0.1 -0.2 +0.3 -0.7 +0.2
nitrogen source Ammonium chloride (N) +0.5 -0.1 -0.9 +0.0 +0.3
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.5 +0.2 -0.4 +0.3 -0.3
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 -0.3 +0.3 +0.7 -0.3
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.3 -0.2 +0.6 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.4 -0.1 +0.3 -0.3 +0.3
nitrogen source TNT (N) +1.2 +0.2 -0.5 -0.2 +0.1
nitrogen source TNT (N) +1.0 +0.2 -0.1 +0.3 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.2 +0.2 -0.2 +0.9 +0.1
nitrogen source TNT (N) +1.0 +0.2 -0.1 +0.1 +0.1
nitrogen source TNT (N) +1.1 +0.2 -0.1 +0.5 +0.0
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IAI47_19585
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IAI47_19590
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IAI47_19600
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IAI47_19605
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