Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_19450 and IAI47_19455 are separated by 81 nucleotidesIAI47_19455 and IAI47_19460 are separated by 146 nucleotidesIAI47_19460 and IAI47_19465 are separated by 21 nucleotidesIAI47_19465 and IAI47_19470 are separated by 91 nucleotides IAI47_19450: IAI47_19450 - hypothetical protein, at 119,235 to 119,906 _19450 IAI47_19455: IAI47_19455 - MBL fold metallo-hydrolase, at 119,988 to 120,839 _19455 IAI47_19460: IAI47_19460 - LysR family transcriptional regulator, at 120,986 to 121,882 _19460 IAI47_19465: IAI47_19465 - VOC family protein, at 121,904 to 122,323 _19465 IAI47_19470: IAI47_19470 - GABA permease, at 122,415 to 123,830 _19470
Group Condition IAI47_19450 IAI47_19455 IAI47_19460 IAI47_19465 IAI47_19470
carbon source Ying_AminoAcid20 rep B; time point 3 -2.0 -0.2 -0.0 -0.2 +0.0
carbon source Ying_AminoAcid20 rep C; time point 3 -1.9 -0.2 -0.2 -0.1 +0.0
carbon source Ying_AminoAcid20 rep A; time point 3 -1.9 -0.0 -0.0 -0.2 +0.1
carbon source Ying_Others16 rep C; time point 3 -0.7 -0.3 -0.1 +0.0 -0.7
carbon source Ying_Others16 rep B; time point 3 -0.8 -0.1 +0.1 +0.1 -0.8
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.8 -0.1 -0.1 -0.3 +0.1
carbon source Ying_AminoAcid20 rep A; time point 2 -1.1 -0.2 +0.1 -0.1 +0.0
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.8 -0.1 -0.2 -0.2 +0.1
carbon source Ying_Others16 rep A; time point 3 -0.7 -0.0 +0.1 +0.1 -0.6
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 -0.8 +0.3 -0.0 -0.3
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -0.4 +0.1 -0.7 +0.1
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.0 -0.6 -0.6 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 -0.3 -0.7 +0.3 -0.3 -0.1
carbon source Ying_Others16 rep A; time point 2 -0.4 -0.2 +0.2 +0.1 -0.7
nitrogen source Ammonium chloride (N) +0.1 -0.7 -0.2 -0.3 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.2 +0.2 -0.3 -0.3
carbon source Ying_Others16 rep B; time point 2 -0.5 -0.0 +0.2 +0.0 -0.6
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 -0.5 +0.5 -0.0 -0.3
carbon source Ying_AminoAcid20 rep B; time point 2 -1.0 -0.1 +0.2 +0.2 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 -0.6 -0.2 +0.4 -0.1 -0.1
carbon source Ying_Others16 rep C; time point 2 -0.5 +0.1 +0.2 +0.3 -0.7
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 -0.6 +0.3 +0.3 -0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 +0.3 +0.4 -0.2 -0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.1 +0.7 -0.5 -0.1
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.5 +0.4 +0.4 -0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.4 +0.1 -0.6 +0.2
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 +0.2 -0.1 +0.4 +0.3
no stress control Defined media control, aerobic -0.2 +0.5 +0.2 -0.4 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 +0.0 +0.7 +0.3 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 -0.2 +1.0 +0.1 -0.2
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IAI47_19450
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IAI47_19455
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IAI47_19465
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IAI47_19470
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