Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_19440 and IAI47_19445 are separated by 97 nucleotidesIAI47_19445 and IAI47_19450 are separated by 226 nucleotidesIAI47_19450 and IAI47_19455 are separated by 81 nucleotidesIAI47_19455 and IAI47_19460 are separated by 146 nucleotides IAI47_19440: IAI47_19440 - SDR family oxidoreductase, at 116,950 to 118,008 _19440 IAI47_19445: IAI47_19445 - LysR family transcriptional regulator, at 118,106 to 119,008 _19445 IAI47_19450: IAI47_19450 - hypothetical protein, at 119,235 to 119,906 _19450 IAI47_19455: IAI47_19455 - MBL fold metallo-hydrolase, at 119,988 to 120,839 _19455 IAI47_19460: IAI47_19460 - LysR family transcriptional regulator, at 120,986 to 121,882 _19460
Group Condition IAI47_19440 IAI47_19445 IAI47_19450 IAI47_19455 IAI47_19460
carbon source Ying_AminoAcid20 rep B; time point 3 +0.0 +0.2 -2.0 -0.2 -0.0
carbon source Ying_AminoAcid20 rep C; time point 3 +0.1 +0.3 -1.9 -0.2 -0.2
carbon source Ying_AminoAcid20 rep A; time point 3 +0.0 +0.2 -1.9 -0.0 -0.0
nitrogen source Ammonium chloride (N) +0.3 -1.0 +0.1 -0.7 -0.2
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.2 +0.1 -0.8 -0.2 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.1 -0.3 -0.8 +0.3
carbon source Ying_AminoAcid20 rep A; time point 2 +0.1 -0.0 -1.1 -0.2 +0.1
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.0 +0.2 -0.8 -0.1 -0.2
carbon source Ying_AminoAcid20 rep B; time point 2 +0.1 +0.0 -1.0 -0.1 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 -0.1 -0.2 -0.5 -0.3 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 -0.2 +0.3 -0.3 -0.6 -0.0
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.0 +0.4 -0.8 -0.1 -0.1
carbon source Ying_Others16 rep C; time point 3 +0.1 +0.3 -0.7 -0.3 -0.1
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.0 -0.1 -0.5 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 +0.1 +0.1 -0.3 -0.7 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.0 +0.0 -0.4 -0.5 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.2 -0.1 -0.2 -0.5 +0.2
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.0 +0.2 -0.3 -0.6 +0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 +0.4 -0.2 -0.3 +0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.5 -0.1 -0.2 -0.4 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 -0.0 -0.4 +0.4 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.3 +0.1 -0.6 -0.2 +0.4
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.5 -0.2 +0.1 +0.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.3 -0.0 -0.5 +0.6
no stress control Defined media control, aerobic -0.5 +0.2 -0.2 +0.5 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 -0.5 -0.1 +0.4 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.3 -0.4 +0.0 +0.7
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.5 -0.1 +0.5 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.0 +0.5 -0.1 -0.2 +1.0
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 +0.4 +0.1 +0.6 +0.2
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