Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_19430 and IAI47_19435 are separated by 103 nucleotidesIAI47_19435 and IAI47_19440 are separated by 53 nucleotidesIAI47_19440 and IAI47_19445 are separated by 97 nucleotidesIAI47_19445 and IAI47_19450 are separated by 226 nucleotides IAI47_19430: IAI47_19430 - GNAT family N-acetyltransferase, at 115,444 to 115,914 _19430 IAI47_19435: IAI47_19435 - 23S rRNA pseudouridine(2604) synthase RluF, at 116,018 to 116,896 _19435 IAI47_19440: IAI47_19440 - SDR family oxidoreductase, at 116,950 to 118,008 _19440 IAI47_19445: IAI47_19445 - LysR family transcriptional regulator, at 118,106 to 119,008 _19445 IAI47_19450: IAI47_19450 - hypothetical protein, at 119,235 to 119,906 _19450
Group Condition IAI47_19430 IAI47_19435 IAI47_19440 IAI47_19445 IAI47_19450
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.2 -0.1 +0.0 -0.5 -0.2
carbon source Ying_AminoAcid20 rep B; time point 3 -0.1 +0.1 +0.0 +0.2 -2.0
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.3 -0.3 -0.0 +0.2 -0.3
stress copper (II) chloride 2 uM, anaerobic -0.2 -0.7 +0.1 -0.3 -0.5
carbon source Ying_AminoAcid20 rep A; time point 3 +0.2 +0.1 +0.0 +0.2 -1.9
stress copper (II) chloride 2 uM, anaerobic -1.3 -0.4 +0.1 +0.2 +0.0
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 -0.3 -0.7 +0.1 -0.2
carbon source Ying_AminoAcid20 rep C; time point 3 +0.2 +0.0 +0.1 +0.3 -1.9
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.7 +0.1 +0.0 +0.2 -0.8
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.9 -0.1 -0.4 -0.0 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 -0.4 +0.0 +0.2 -0.0
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.2 -0.0 +0.3 -0.0 +0.2
stress copper (II) chloride 2 uM, anaerobic +0.3 -0.9 -0.2 -0.2 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 +0.5 -0.4 -0.0 -0.4
carbon source Ying_AminoAcid20 rep C; time point 2 +0.3 +0.2 +0.1 +0.0 -1.1
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 +0.1 +0.2 +0.2 -0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.7 -0.1 -0.2 -0.2 -0.3
nitrogen source Ammonium chloride (N) +0.4 +0.2 +0.3 -1.0 +0.1
stress Manganese (II) chloride tetrahydrate 50 uM, anaerobic +0.6 -0.4 -0.2 +0.2 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.3 +0.4 +0.3 +0.1 -0.6
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.5 +0.7 -0.0 -0.3 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 +0.5 +0.9 -0.1 -0.2 -0.5
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.7 +0.5 +0.1 -0.5 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.8 +0.3 +0.2 -0.2 -0.2
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 +0.3 +0.5 -0.1 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.6 +0.4 -0.1 +0.3 -0.4
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.0 +0.1 -0.4 +0.2 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +1.0 +0.3 -0.0 +0.0 -0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.8 +0.1 +0.4 +0.2 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.7 +0.5 +0.0 +0.5 -0.1
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