Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_19270 and IAI47_19275 are separated by 116 nucleotidesIAI47_19275 and IAI47_19280 are separated by 93 nucleotidesIAI47_19280 and IAI47_19285 are separated by 85 nucleotidesIAI47_19285 and IAI47_19290 overlap by 4 nucleotides IAI47_19270: IAI47_19270 - alpha/beta fold hydrolase, at 81,547 to 82,311 _19270 IAI47_19275: IAI47_19275 - DMT family transporter, at 82,428 to 82,962 _19275 IAI47_19280: IAI47_19280 - PLP-dependent aminotransferase family protein, at 83,056 to 84,342 _19280 IAI47_19285: IAI47_19285 - AzlC family ABC transporter permease, at 84,428 to 85,144 _19285 IAI47_19290: IAI47_19290 - AzlD family protein, at 85,141 to 85,437 _19290
Group Condition IAI47_19270 IAI47_19275 IAI47_19280 IAI47_19285 IAI47_19290
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.6 -0.7 -0.1 +0.1 -0.8
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.0 -0.8 -0.0 -0.2 +0.1
carbon source Ying_sugar7 rep C; time point 2 -0.1 -1.3 +0.0 -0.1 -0.1
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -1.2 +0.2 -0.0 +0.1
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 -0.3 -0.2 -0.3 +0.4
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 +0.5 -0.3 -0.2 -0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 -0.2 -0.2 -0.3 +0.4
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.8 -0.0 +0.0 -1.4
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.7 +0.3 -0.1 +0.0
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 -0.9 -0.2 -0.2 +0.2
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.5 -0.5 +0.0 +0.1 +0.3
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 +0.6 -0.1 -0.2 -0.5
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 +0.5 +0.0 -0.2 -0.5
carbon source Ying_all64 rep B; time point 3 -0.3 -0.6 -0.0 +0.2 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 -0.5 +0.5 +0.2 -0.2 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.7 +0.1 -0.1 -0.5
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 +0.4 -0.2 -0.2 +0.4
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 +0.5 +0.0 +0.0 -0.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 -0.7 +0.4 +0.2 +0.0 +0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 +0.8 +0.3 +0.0 -0.2
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 -0.6 +0.1 +0.3 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 -0.4 +0.6 +0.2 +0.1 -0.2
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.5 +0.3 -0.2 -0.1 -0.3
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.3 -0.1 +0.3 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.7 +0.2 +0.2 -0.2
stress copper (II) chloride 2 uM, anaerobic +0.6 +0.7 -0.1 +0.2 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.0 +0.7 +0.5 +0.5 -0.5
nitrogen source Ammonium chloride (N) +0.4 +0.7 +0.1 -0.1 +0.2
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.6 +0.3 +0.0 +0.7
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.0 +0.5 +0.3 +0.3 +0.5
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IAI47_19270
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IAI47_19275
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IAI47_19285
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IAI47_19290
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