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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_18985 and IAI47_18990 are separated by 137 nucleotides
IAI47_18990 and IAI47_18995 are separated by 67 nucleotides
IAI47_18995 and IAI47_19000 are separated by 33 nucleotides
IAI47_19000 and IAI47_19005 are separated by 159 nucleotides
IAI47_18985: IAI47_18985 - MarR family transcriptional regulator, at 29,556 to 30,071
_18985
IAI47_18990: IAI47_18990 - MFS transporter, at 30,209 to 31,363
_18990
IAI47_18995: IAI47_18995 - aspartate/glutamate racemase family protein, at 31,431 to 32,123
_18995
IAI47_19000: IAI47_19000 - DHCW motif cupin fold protein, at 32,157 to 32,486
_19000
IAI47_19005: IAI47_19005 - DUF1275 domain-containing protein, at 32,646 to 33,440
_19005
Group
Condition
IAI47
_18985
IAI47
_18990
IAI47
_18995
IAI47
_19000
IAI47
_19005
stress
copper (II) chloride 2 uM, anaerobic
-1.4
-0.4
-0.1
-0.5
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.6
-0.4
-0.1
-0.4
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.8
+0.2
-0.3
-0.7
+0.2
stress
Cadmium acetate 8 uM, aerobic
-0.9
-0.2
-0.2
-0.2
+0.1
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.9
+0.3
+0.3
-0.5
+0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.4
-0.3
-0.8
+0.2
carbon source
Ying_sugar7 rep C; time point 2
-1.3
+0.3
-0.2
+0.5
+0.0
stress
Manganese (II) chloride tetrahydrate 50 uM, anaerobic
+0.2
+0.2
+0.1
-0.9
-0.2
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.8
+0.3
+0.1
-0.3
+0.4
no stress control
Defined media control, anaerobic
-0.5
+0.1
+0.3
+0.4
-0.3
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.6
+0.2
+0.1
-0.7
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
+0.2
+0.2
-0.6
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.3
+0.5
-0.3
+0.3
-0.0
stress
copper (II) chloride 2 uM, anaerobic
+0.8
-0.6
-0.1
+0.2
+0.0
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
+0.4
-0.5
+0.1
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.7
+0.3
-0.3
+0.4
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
+0.7
-0.3
+0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.0
+0.3
-0.0
+0.5
-0.8
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.8
+0.4
+0.0
-0.0
-0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
+0.4
-0.3
+0.3
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.9
+0.4
-0.2
+0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.3
+0.2
+0.0
+0.1
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.1
+0.5
+0.0
+0.3
-0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
+0.5
-0.2
+0.4
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+0.8
+0.6
-0.1
+0.2
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.7
+0.6
+0.4
-0.1
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.0
+0.3
+0.1
+0.1
+0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.8
+0.5
+0.0
+0.2
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.9
+0.7
+0.2
-0.0
+0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.0
+0.7
-0.1
+0.4
-0.2
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