Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_18820 and IAI47_18825 are separated by 43 nucleotidesIAI47_18825 and IAI47_18830 are separated by 265 nucleotidesIAI47_18830 and IAI47_18835 are separated by 92 nucleotidesIAI47_18835 and IAI47_18840 are separated by 2 nucleotides IAI47_18820: IAI47_18820 - helix-turn-helix domain-containing protein, at 4,012,164 to 4,012,631 _18820 IAI47_18825: IAI47_18825 - malonic semialdehyde reductase, at 4,012,675 to 4,013,265 _18825 IAI47_18830: IAI47_18830 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 4,013,531 to 4,014,895 _18830 IAI47_18835: IAI47_18835 - membrane protein insertase YidC, at 4,014,988 to 4,016,634 _18835 IAI47_18840: IAI47_18840 - membrane protein insertion efficiency factor YidD, at 4,016,637 to 4,016,894 _18840
Group Condition IAI47_18820 IAI47_18825 IAI47_18830 IAI47_18835 IAI47_18840
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.1 -0.3 -2.9 N.D. -3.5
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.6 -0.2 -2.9 N.D. -3.4
stress Cobalt chloride 10 uM, aerobic -1.0 +0.1 -3.0 N.D. -1.7
stress copper (II) chloride 5 uM, aerobic -0.1 -0.2 -3.1 N.D. -1.7
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.1 -3.1 N.D. -1.9
stress Uranyl Acetate Dihydrate 200 uM, aerobic +0.1 -0.2 -3.3 N.D. -1.6
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 +0.2 -3.3 N.D. -1.5
stress Aluminum potassium sulfate dodecahydrate 1 mM, aerobic +0.1 -0.3 -3.4 N.D. -1.2
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.1 -2.1 N.D. -2.6
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 -0.1 -0.2 -3.8 N.D. -0.4
stress Cadmium acetate 8 uM, anaerobic -0.4 -0.0 -3.2 N.D. -0.9
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 -0.2 -2.5 N.D. -1.5
no stress control Defined media control, anaerobic -0.8 +0.0 -3.3 N.D. -0.3
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.4 -2.1 N.D. -1.8
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 +0.5 -0.1 -3.1 N.D. -1.4
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 +0.2 -2.7 N.D. -1.3
stress Manganese (II) chloride tetrahydrate 50 uM, anaerobic -0.8 -0.2 -3.3 N.D. +0.3
carbon source Ying_OrganicAcid7 rep B; time point 2 -0.2 -0.2 -3.8 N.D. +0.2
carbon source Ying_sugar7 rep B; time point 2 -0.8 +0.0 -3.7 N.D. +0.6
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 +0.2 -2.3 N.D. -2.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.3 -3.9 N.D. -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 +0.0 -2.9 N.D. -1.1
carbon source Ying_AminoAcid20 rep C; time point 2 -0.3 +0.0 -3.8 N.D. +0.5
carbon source Ying_AminoAcid20 rep C; time point 1 -0.0 -0.0 -3.7 N.D. +0.5
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 +0.1 -3.0 N.D. +0.9
carbon source Ying_sugar7 rep C; time point 2 -0.5 +0.2 -3.3 N.D. +0.6
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 +0.1 -2.9 N.D. +1.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.3 -3.5 N.D. +0.6
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 +0.3 -3.7 N.D. +0.9
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.5 +0.1 -3.3 N.D. +0.8
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IAI47_18820
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IAI47_18825
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IAI47_18835
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IAI47_18840
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