Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_18065 and IAI47_18070 are separated by 2 nucleotidesIAI47_18070 and IAI47_18075 are separated by 40 nucleotidesIAI47_18075 and IAI47_18080 are separated by 89 nucleotidesIAI47_18080 and IAI47_18085 are separated by 356 nucleotides IAI47_18065: IAI47_18065 - deoxyribonuclease V, at 3,842,700 to 3,843,368 _18065 IAI47_18070: IAI47_18070 - uroporphyrinogen decarboxylase, at 3,843,371 to 3,844,438 _18070 IAI47_18075: IAI47_18075 - NAD(+) diphosphatase, at 3,844,479 to 3,845,249 _18075 IAI47_18080: IAI47_18080 - Rsd/AlgQ family anti-sigma factor, at 3,845,339 to 3,845,845 _18080 IAI47_18085: IAI47_18085 - phosphomethylpyrimidine synthase ThiC, at 3,846,202 to 3,848,109 _18085
Group Condition IAI47_18065 IAI47_18070 IAI47_18075 IAI47_18080 IAI47_18085
nitrogen source Ammonium chloride (N) -0.5 N.D. +0.0 -0.2 -1.2
carbon source Ying_Nucleobase14 rep B; time point 3 +0.1 N.D. -0.1 -0.2 -0.5
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 N.D. -0.2 +0.2 +0.2
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.7 N.D. +0.2 +0.2 +0.1
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 N.D. +0.3 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 N.D. +0.2 +0.3 -0.2
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 N.D. +0.2 +0.2 -0.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 N.D. +0.3 +0.2 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.0 N.D. +0.2 +0.4 -0.4
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 N.D. +0.2 +0.4 +0.0
stress copper (II) chloride 2 uM, anaerobic -0.1 N.D. -0.1 +0.6 -0.2
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 N.D. +0.4 +0.1 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.8 N.D. -0.2 +0.1 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.5 N.D. +0.1 +0.2 -0.2
stress Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic +0.5 N.D. +0.2 -0.1 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 N.D. +0.1 +0.3 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 +0.6 N.D. -0.1 +0.3 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.6 N.D. -0.1 +0.2 +0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.7 N.D. +0.4 +0.1 -0.3
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.5 N.D. +0.2 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 N.D. +0.4 +0.2 +0.1
nitrogen source nitrogen source nitrite 1mM +0.3 N.D. +0.1 +0.4 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 N.D. +0.5 +0.0 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 N.D. +0.6 +0.2 -0.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 N.D. +0.3 +0.4 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.9 N.D. +0.2 +0.0 -0.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.7 N.D. +0.5 -0.0 -0.0
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.5 N.D. +0.2 +0.2 +0.2
nitrogen source nitrogen source nitrite 0.5mM +0.4 N.D. +0.1 +0.5 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 N.D. +0.6 +0.2 +0.2
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