Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_17990 and IAI47_17995 are separated by 194 nucleotidesIAI47_17995 and IAI47_18000 overlap by 26 nucleotidesIAI47_18000 and IAI47_18005 are separated by 62 nucleotidesIAI47_18005 and IAI47_18010 are separated by 17 nucleotides IAI47_17990: IAI47_17990 - methionine synthase, at 3,821,451 to 3,825,134 _17990 IAI47_17995: IAI47_17995 - glyoxylate bypass operon transcriptional repressor IclR, at 3,825,329 to 3,826,156 _17995 IAI47_18000: IAI47_18000 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 3,826,131 to 3,827,879 _18000 IAI47_18005: IAI47_18005 - isocitrate lyase, at 3,827,942 to 3,829,243 _18005 IAI47_18010: IAI47_18010 - malate synthase A, at 3,829,261 to 3,830,859 _18010
Group Condition IAI47_17990 IAI47_17995 IAI47_18000 IAI47_18005 IAI47_18010
carbon source Ying_Others16 rep A; time point 3 -0.2 -0.1 -0.2 -0.6 -0.6
carbon source Ying_Nucleobase14 rep B; time point 3 -0.4 -0.2 -0.2 -0.4 -0.4
carbon source Ying_Others16 rep B; time point 3 -0.2 -0.1 -0.2 -0.6 -0.4
carbon source Ying_Nucleobase14 rep A; time point 3 -0.4 -0.3 -0.1 -0.4 -0.3
carbon source Ying_Others16 rep C; time point 3 -0.2 +0.0 -0.2 -0.5 -0.5
carbon source Ying_Nucleobase14 rep C; time point 3 -0.4 -0.1 -0.2 -0.2 -0.4
carbon source Ying_Others16 rep A; time point 2 -0.2 -0.2 -0.1 -0.5 -0.2
carbon source Ying_Others16 rep C; time point 2 -0.3 -0.1 -0.2 -0.3 -0.4
stress Defined media, anaerobic, with FW303 groundwater -0.5 -0.3 -0.0 -0.1 -0.2
carbon source Ying_Others16 rep B; time point 2 -0.2 -0.3 -0.1 -0.3 -0.2
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.2 +0.2 -0.1 -0.3 -0.3
carbon source Ying_sugar7 rep B; time point 3 -0.3 +0.2 -0.1 -0.3 -0.1
carbon source Ying_sugar7 rep C; time point 3 -0.3 +0.2 -0.1 -0.1 -0.3
carbon source Ying_sugar7 rep A; time point 3 -0.3 +0.2 -0.2 -0.1 -0.2
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.2 +0.4 -0.1 -0.3 -0.3
stress Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic -0.4 -0.3 +0.0 +0.2 +0.1
no stress control Defined media control, anaerobic -0.5 -0.3 +0.1 +0.1 -0.0
carbon source Ying_Nucleobase14 rep A; time point 1 -0.2 -0.4 +0.0 +0.1 +0.2
nitrogen source Ammonium chloride (N) +0.0 -0.6 +0.3 +0.0 +0.1
carbon source Ying_all64 rep A; time point 3 +0.0 +0.5 -0.2 -0.3 -0.2
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.2 +0.5 -0.0 -0.1 -0.2
stress copper (II) chloride 2 uM, anaerobic -0.2 -0.4 +0.1 +0.4 +0.1
stress copper (II) chloride 2 uM, anaerobic -0.1 +0.4 -0.2 -0.2 +0.2
carbon source Ying_all64 rep B; time point 3 +0.1 +0.6 -0.2 -0.2 -0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.4 +0.3 -0.1 -0.2
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.0 +0.2 -0.2 +0.2 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 +0.6 +0.0 -0.1 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 -0.2 +0.1 +0.5 +0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.3 +0.2 +0.3 -0.1
nitrogen source nitrogen source nitrite 0.5mM +0.1 +0.2 +0.3 +0.1 +0.2
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