Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_17870 and IAI47_17875 are separated by 450 nucleotidesIAI47_17875 and IAI47_17880 are separated by 89 nucleotidesIAI47_17880 and IAI47_17885 are separated by 164 nucleotidesIAI47_17885 and IAI47_17890 are separated by 98 nucleotides IAI47_17870: IAI47_17870 - conjugal transfer protein TraF, at 3,794,795 to 3,796,045 _17870 IAI47_17875: IAI47_17875 - zinc uptake transcriptional repressor Zur, at 3,796,496 to 3,797,017 _17875 IAI47_17880: IAI47_17880 - CsbD family protein, at 3,797,107 to 3,797,319 _17880 IAI47_17885: IAI47_17885 - MATE family efflux transporter DinF, at 3,797,484 to 3,798,806 _17885 IAI47_17890: IAI47_17890 - repressor LexA, at 3,798,905 to 3,799,519 _17890
Group Condition IAI47_17870 IAI47_17875 IAI47_17880 IAI47_17885 IAI47_17890
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.1 -1.6 -0.0 N.D.
nitrogen source nitrogen source nitrite 1mM -0.0 -0.8 -0.8 -0.0 N.D.
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.5 -0.6 -0.0 N.D.
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 -0.2 -0.3 -0.8 -0.1 N.D.
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 -0.4 -0.7 +0.1 N.D.
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 -0.3 -0.8 -0.1 N.D.
carbon source Ying_AminoAcid20 rep B; time point 2 +0.3 -0.5 -0.3 -0.1 N.D.
carbon source Ying_AminoAcid20 rep C; time point 3 +0.4 -0.5 -0.2 -0.1 N.D.
stress Manganese (II) chloride tetrahydrate 50 uM, aerobic -0.4 -0.2 +0.4 -0.2 N.D.
carbon source Ying_AminoAcid20 rep A; time point 3 +0.3 -0.6 +0.2 -0.1 N.D.
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.5 +0.5 +0.0 N.D.
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 +0.2 +0.4 -0.1 N.D.
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 -0.4 +0.6 +0.1 N.D.
no stress control Defined media control, anaerobic -0.4 -0.0 +0.6 -0.2 N.D.
carbon source Ying_all64 rep A; time point 3 +0.5 -0.5 +0.3 -0.1 N.D.
carbon source Ying_Nucleobase14 rep A; time point 3 +0.3 -0.5 +0.4 -0.0 N.D.
stress dichromate 5 uM, aerobic -0.0 +1.0 -0.6 -0.2 N.D.
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -0.3 +0.7 +0.1 N.D.
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -0.2 +0.4 +0.3 N.D.
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.6 -0.3 +0.4 N.D.
stress copper (II) chloride 2 uM, anaerobic +0.4 +1.3 -0.9 -0.1 N.D.
carbon source Ying_all64 rep C; time point 3 +0.3 -0.2 +0.8 -0.0 N.D.
stress dichromate 5 uM, aerobic +0.0 +1.2 -0.2 -0.0 N.D.
carbon source Ying_Others16 rep C; time point 3 +0.2 +0.6 +0.5 -0.1 N.D.
stress dichromate 5 uM, aerobic +0.1 +1.0 +0.3 -0.1 N.D.
nitrogen source TNT (N) +2.0 -0.7 -0.0 +0.1 N.D.
nitrogen source Ammonium chloride (N) +1.8 -0.5 -0.0 +0.3 N.D.
nitrogen source TNT (N) +1.9 -0.3 -0.1 +0.0 N.D.
nitrogen source TNT (N) +1.8 -0.3 +0.1 +0.0 N.D.
nitrogen source TNT (N) +1.9 -0.3 +0.3 +0.1 N.D.
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