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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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500 nt
IAI47_17825 and IAI47_17830 overlap by 1 nucleotides
IAI47_17830 and IAI47_17835 are separated by 121 nucleotides
IAI47_17835 and IAI47_17840 are separated by 40 nucleotides
IAI47_17840 and IAI47_17845 are separated by 241 nucleotides
IAI47_17825: IAI47_17825 - MmcQ/YjbR family DNA-binding protein, at 3,786,989 to 3,787,312
_17825
IAI47_17830: IAI47_17830 - YjbQ family protein, at 3,787,312 to 3,787,731
_17830
IAI47_17835: IAI47_17835 - aspartate/tyrosine/aromatic aminotransferase, at 3,787,853 to 3,789,046
_17835
IAI47_17840: IAI47_17840 - YitT family protein, at 3,789,087 to 3,789,701
_17840
IAI47_17845: IAI47_17845 - Lrp/AsnC family transcriptional regulator, at 3,789,943 to 3,790,422
_17845
Group
Condition
IAI47
_17825
IAI47
_17830
IAI47
_17835
IAI47
_17840
IAI47
_17845
nitrogen source
Ammonium chloride (N)
-0.4
-0.4
N.D.
-0.2
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.6
-0.0
N.D.
-0.1
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
-0.8
-0.2
N.D.
-0.2
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.5
-0.2
N.D.
-0.2
-0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.1
+0.2
N.D.
-0.1
-0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.4
N.D.
-0.2
-0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.8
+0.1
N.D.
-0.0
-0.3
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.5
-0.2
N.D.
-0.3
-0.0
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
-0.2
N.D.
+0.1
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.9
+0.1
N.D.
+0.0
+0.1
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
+0.0
N.D.
+0.2
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
-0.1
N.D.
+0.5
-0.4
stress
copper (II) chloride 2 uM, anaerobic
-0.3
-0.4
N.D.
+0.3
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.3
N.D.
+0.1
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
-0.3
N.D.
-0.3
+0.4
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
+0.3
N.D.
-0.4
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-0.1
N.D.
+0.1
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.3
N.D.
+0.5
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
-0.5
+0.5
N.D.
-0.1
+0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.2
N.D.
-0.2
-0.2
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
+0.1
N.D.
-0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
-0.2
N.D.
-0.1
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
+0.5
N.D.
+0.4
-0.0
stress
copper (II) chloride 2 uM, anaerobic
+0.7
+0.5
N.D.
-0.1
-0.5
carbon source
Ying_OrganicAcid7 rep B; time point 3
-0.1
+0.3
N.D.
+0.2
+0.4
stress
copper (II) chloride 5 uM, aerobic
+0.5
+0.3
N.D.
+0.1
-0.0
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.0
+0.1
N.D.
-0.2
+0.2
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.3
N.D.
+0.2
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
+0.2
N.D.
+0.2
+0.3
stress
copper (II) chloride 2 uM, anaerobic
+0.2
+0.3
N.D.
+0.6
+0.3
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