Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_17525 and IAI47_17530 are separated by 1 nucleotidesIAI47_17530 and IAI47_17535 are separated by 103 nucleotidesIAI47_17535 and IAI47_17540 overlap by 1 nucleotidesIAI47_17540 and IAI47_17545 are separated by 57 nucleotides IAI47_17525: IAI47_17525 - tartrate dehydrogenase, at 3,715,512 to 3,716,582 _17525 IAI47_17530: IAI47_17530 - glycoside hydrolase family 28 protein, at 3,716,584 to 3,717,915 _17530 IAI47_17535: IAI47_17535 - carbohydrate ABC transporter permease, at 3,718,019 to 3,718,834 _17535 IAI47_17540: IAI47_17540 - sugar ABC transporter permease, at 3,718,834 to 3,719,706 _17540 IAI47_17545: IAI47_17545 - extracellular solute-binding protein, at 3,719,764 to 3,721,095 _17545
Group Condition IAI47_17525 IAI47_17530 IAI47_17535 IAI47_17540 IAI47_17545
carbon source Ying_OrganicAcid7 rep B; time point 3 -1.0 +0.2 -0.4 -0.0 +0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 -1.0 +0.1 -0.2 -0.0 +0.2
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.9 +0.1 -0.2 -0.0 +0.1
carbon source Ying_OrganicAcid7 rep C; time point 2 -0.9 +0.1 -0.0 +0.0 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.1 -0.2 -0.2 -0.2
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 -0.1 -0.7 -0.0 +0.1
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.2 -0.4 -0.1 +0.0
carbon source Ying_OrganicAcid7 rep B; time point 2 -0.9 -0.0 +0.3 +0.0 +0.2
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 -0.3 -0.4 +0.0 +0.1
stress copper (II) chloride 2 uM, anaerobic +0.3 -0.2 -0.2 -0.0 -0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 -0.3 -0.4 +0.3 +0.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.3 -0.4 +0.0 -0.1
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.1 +0.3 +0.1 -0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.4 -0.2 +0.0 +0.1
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 -0.3 +0.3 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.2 -0.3 +0.2 +0.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 +0.2 -0.1 -0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.5 +0.5 +0.1 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.3 +0.3 -0.1 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 +0.3 -0.1 -0.1 +0.4 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.4 +0.4 -0.0 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.2 +0.3 +0.2 +0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 +0.2 -0.1 +0.1 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.1 -0.1 +0.3 +0.2
carbon source Ying_sugar7 rep C; time point 2 +0.1 +0.4 +0.3 -0.2 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 +0.2 +0.0 +0.3 +0.1 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 +0.2 +0.1 +0.2 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 +0.1 +0.2 +0.1 +0.3 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 -0.0 +0.4 +0.2 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 +0.1 +0.2 +0.2 +0.3
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IAI47_17525
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IAI47_17530
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IAI47_17540
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IAI47_17545
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