Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_17015 and IAI47_17020 overlap by 1 nucleotidesIAI47_17020 and IAI47_17025 are separated by 65 nucleotidesIAI47_17025 and IAI47_17030 are separated by 17 nucleotidesIAI47_17030 and IAI47_17035 are separated by 24 nucleotides IAI47_17015: IAI47_17015 - tRNA pseudouridine(55) synthase TruB, at 3,609,837 to 3,610,781 _17015 IAI47_17020: IAI47_17020 - 30S ribosome-binding factor RbfA, at 3,610,781 to 3,611,188 _17020 IAI47_17025: IAI47_17025 - translation initiation factor IF-2, at 3,611,254 to 3,613,947 _17025 IAI47_17030: IAI47_17030 - transcription termination/antitermination protein NusA, at 3,613,965 to 3,615,452 _17030 IAI47_17035: IAI47_17035 - ribosome maturation factor RimP, at 3,615,477 to 3,615,929 _17035
Group Condition IAI47_17015 IAI47_17020 IAI47_17025 IAI47_17030 IAI47_17035
carbon source Ying_sugar7 rep B; time point 3 -0.2 -3.4 N.D. N.D. -3.1
carbon source Ying_sugar7 rep A; time point 3 -0.2 -2.9 N.D. N.D. -3.3
stress copper (II) chloride 5 uM, aerobic +0.1 -2.7 N.D. N.D. -3.4
carbon source Ying_sugar7 rep A; time point 2 +0.1 -2.3 N.D. N.D. -3.6
carbon source Ying_sugar7 rep C; time point 3 +0.1 -2.3 N.D. N.D. -3.2
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -3.2 N.D. N.D. -1.9
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -2.4 N.D. N.D. -2.7
carbon source Ying_sugar7 rep B; time point 2 -0.1 -2.7 N.D. N.D. -2.4
no stress control Defined media control, aerobic +0.0 -3.8 N.D. N.D. -1.4
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -2.3 N.D. N.D. -2.5
stress copper (II) chloride 5 uM, aerobic +0.1 -3.0 N.D. N.D. -2.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 -2.4 N.D. N.D. -2.2
carbon source Ying_AminoAcid20 rep B; time point 2 +0.3 -2.8 N.D. N.D. -2.3
carbon source Ying_all64 rep B; time point 3 +0.2 -3.3 N.D. N.D. -1.7
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -1.8 N.D. N.D. -2.8
carbon source Ying_AminoAcid20 rep C; time point 2 +0.3 -1.9 N.D. N.D. -3.0
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 -2.0 N.D. N.D. -2.2
stress dichromate 5 uM, aerobic +0.0 -3.5 N.D. N.D. -1.1
carbon source Ying_all64 rep A; time point 2 +0.5 -3.0 N.D. N.D. -2.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -2.4 N.D. N.D. -1.9
stress copper (II) chloride 5 uM, aerobic +0.1 -1.9 N.D. N.D. -2.7
carbon source Ying_Nucleobase14 rep A; time point 2 +0.2 -2.0 N.D. N.D. -2.6
carbon source Ying_AminoAcid20 rep C; time point 3 +0.3 -1.8 N.D. N.D. -3.0
carbon source Ying_Others16 rep C; time point 3 -0.0 -1.4 N.D. N.D. -3.0
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -3.0 N.D. N.D. -1.3
carbon source Ying_AminoAcid20 rep A; time point 3 +0.2 -1.8 N.D. N.D. -2.7
carbon source Ying_AminoAcid20 rep A; time point 2 +0.3 -1.8 N.D. N.D. -2.7
carbon source Ying_all64 rep C; time point 3 +0.2 -2.2 N.D. N.D. -2.1
carbon source Ying_all64 rep A; time point 3 +0.3 -2.6 N.D. N.D. -1.7
carbon source Ying_Others16 rep B; time point 2 +0.3 -0.9 N.D. N.D. -3.2
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IAI47_17015
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IAI47_17020
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IAI47_17035
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