Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_16895 and IAI47_16900 overlap by 4 nucleotidesIAI47_16900 and IAI47_16905 are separated by 426 nucleotidesIAI47_16905 and IAI47_16910 are separated by 277 nucleotidesIAI47_16910 and IAI47_16915 are separated by 190 nucleotides IAI47_16895: IAI47_16895 - efflux RND transporter permease subunit, at 3,580,009 to 3,583,242 _16895 IAI47_16900: IAI47_16900 - efflux RND transporter periplasmic adaptor subunit, at 3,583,239 to 3,584,447 _16900 IAI47_16905: IAI47_16905 - peptidoglycan synthase, at 3,584,874 to 3,586,613 _16905 IAI47_16910: IAI47_16910 - molybdopterin guanine dinucleotide-containing S/N-oxide reductase, at 3,586,891 to 3,589,164 _16910 IAI47_16915: IAI47_16915 - HTH-type transcriptional regulator GalR, at 3,589,355 to 3,590,356 _16915
Group Condition IAI47_16895 IAI47_16900 IAI47_16905 IAI47_16910 IAI47_16915
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.0 -0.3 +0.1 -0.0 -1.0
carbon source Ying_Others16 rep A; time point 3 +0.0 -0.3 +0.0 -0.0 -0.8
carbon source Ying_all64 rep B; time point 3 -0.1 -0.4 +0.1 -0.0 -0.7
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.0 -0.0 +0.0 -0.0 -1.1
carbon source Ying_Others16 rep B; time point 3 +0.1 -0.0 -0.0 -0.0 -1.1
carbon source Ying_AminoAcid20 rep A; time point 3 +0.0 -0.3 +0.0 -0.1 -0.8
carbon source Ying_Others16 rep C; time point 3 +0.1 -0.2 -0.0 -0.0 -0.8
carbon source Ying_AminoAcid20 rep C; time point 3 +0.0 -0.1 +0.0 -0.0 -0.9
carbon source Ying_Others16 rep B; time point 2 -0.0 +0.1 +0.1 +0.0 -1.1
carbon source Ying_AminoAcid20 rep A; time point 2 -0.0 +0.0 +0.0 -0.1 -0.9
carbon source Ying_OrganicAcid7 rep B; time point 2 +0.0 -0.1 +0.1 -0.0 -0.9
carbon source Ying_Others16 rep C; time point 2 -0.1 +0.2 +0.0 -0.1 -0.9
carbon source Ying_Others16 rep A; time point 2 -0.1 +0.1 +0.0 +0.0 -0.9
carbon source Ying_AminoAcid20 rep B; time point 1 -0.0 -0.3 +0.1 +0.0 -0.6
carbon source Ying_sugar7 rep B; time point 2 -0.0 -0.2 +0.2 -0.1 -0.7
carbon source Ying_OrganicAcid7 rep A; time point 3 +0.1 -0.2 +0.1 +0.1 -0.9
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.6 +0.1 +0.1 -0.3
carbon source Ying_sugar7 rep A; time point 2 -0.1 +0.2 +0.0 -0.1 -0.8
nitrogen source Ammonium chloride (N) -0.1 +0.5 +0.1 -0.3 -0.5
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.4 -0.0 +0.2 -0.8
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.7 +0.1 +0.3 +0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.2 +0.2 +0.3 -0.4
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.4 +0.4 -0.1 +0.3
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.6 +0.0 +0.2 +0.5
stress copper (II) chloride 2 uM, anaerobic +0.3 -0.2 +0.1 +0.4 -0.4
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.5 +0.3 +0.2 -0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.4 -0.0 +0.1 +0.5
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.7 -0.1 -0.0 +0.3
stress copper (II) chloride 2 uM, anaerobic +0.1 +0.7 +0.0 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.2 +0.1 +0.2 +0.6
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IAI47_16895
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IAI47_16900
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IAI47_16910
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IAI47_16915
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