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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_16580 and IAI47_16585 overlap by 4 nucleotides
IAI47_16585 and IAI47_16590 are separated by 182 nucleotides
IAI47_16590 and IAI47_16595 overlap by 50 nucleotides
IAI47_16595 and IAI47_16600 are separated by 198 nucleotides
IAI47_16580: IAI47_16580 - McrC family protein, at 3,514,775 to 3,516,091
_16580
IAI47_16585: IAI47_16585 - McrB family protein, at 3,516,088 to 3,518,148
_16585
IAI47_16590: IAI47_16590 - DUF4942 domain-containing protein, at 3,518,331 to 3,518,597
_16590
IAI47_16595: IAI47_16595 - DUF4102 domain-containing protein, at 3,518,548 to 3,518,658
_16595
IAI47_16600: IAI47_16600 - tRNA-OTHER, at 3,518,857 to 3,518,963
_16600
Group
Condition
IAI47
_16580
IAI47
_16585
IAI47
_16590
IAI47
_16595
IAI47
_16600
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
-0.1
+0.2
-0.3
-3.4
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.0
+0.6
+0.1
-4.5
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
-0.1
-0.2
-0.7
-2.1
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.1
-0.0
-1.1
-1.3
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
-0.1
+0.1
-0.9
-1.5
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.0
-0.0
-0.1
+0.7
-2.9
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
-0.0
+0.2
-0.1
-1.6
stress
copper (II) chloride 2 uM, anaerobic
+0.0
+0.1
-0.1
-1.9
+0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-0.0
+0.6
-1.9
+0.4
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.1
+0.3
-0.4
-1.0
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
+0.1
+0.2
+0.6
-2.2
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.1
+0.3
-0.1
-1.4
survival
Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
+0.1
+0.1
-1.6
+0.5
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.0
-0.0
+0.3
+1.2
-2.4
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.1
+0.3
+0.2
-1.4
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.0
-0.1
+0.7
-1.3
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.2
+0.2
-1.2
+0.9
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
+0.1
+0.3
+0.7
-1.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.1
-0.1
-0.5
+1.2
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.3
+0.1
-0.8
+1.7
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
-0.3
+0.0
-0.3
+1.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.1
-0.2
+0.2
+1.3
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
-0.3
-0.2
+0.5
+1.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.2
-0.3
-0.3
+2.3
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.1
-0.0
+0.4
+1.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.2
+0.1
+0.1
-0.2
+1.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.1
+0.0
+0.4
+1.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50
-0.1
-0.1
+0.1
+0.4
+1.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50
-0.0
-0.0
-0.1
+0.5
+1.8
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
-0.0
-0.4
+0.2
+3.3
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IAI47_16585
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IAI47_16590
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