Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_16410 and IAI47_16415 are separated by 117 nucleotidesIAI47_16415 and IAI47_16420 are separated by 11 nucleotidesIAI47_16420 and IAI47_16425 are separated by 84 nucleotidesIAI47_16425 and IAI47_16430 are separated by 582 nucleotides IAI47_16410: IAI47_16410 - YbaK/EbsC family protein, at 3,475,382 to 3,475,846 _16410 IAI47_16415: IAI47_16415 - nucleoside hydrolase, at 3,475,964 to 3,476,959 _16415 IAI47_16420: IAI47_16420 - LacI family DNA-binding transcriptional regulator, at 3,476,971 to 3,477,993 _16420 IAI47_16425: IAI47_16425 - MHS family MFS transporter, at 3,478,078 to 3,479,466 _16425 IAI47_16430: IAI47_16430 - histidine phosphatase family protein, at 3,480,049 to 3,480,603 _16430
Group Condition IAI47_16410 IAI47_16415 IAI47_16420 IAI47_16425 IAI47_16430
carbon source Ying_all64 rep A; time point 3 +0.1 -0.1 -5.5 -0.4 -0.3
carbon source Ying_all64 rep B; time point 2 -0.1 -0.2 -5.3 -0.2 +0.0
carbon source Ying_all64 rep B; time point 3 +0.0 +0.1 -5.3 -0.2 -0.2
carbon source Ying_all64 rep C; time point 3 +0.2 -0.0 -5.4 -0.5 +0.2
carbon source Ying_all64 rep C; time point 2 +0.4 -0.2 -5.4 -0.3 +0.1
carbon source Ying_all64 rep A; time point 2 +0.2 -0.0 -5.2 -0.4 +0.4
carbon source Ying_AminoAcid20 rep C; time point 2 -0.2 -0.0 -3.7 -0.0 -0.4
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -2.4 -1.3 -1.4 +0.2 +0.5
carbon source Ying_AminoAcid20 rep B; time point 2 -0.2 -0.1 -3.6 -0.0 +0.1
carbon source Ying_all64 rep B; time point 1 +0.1 -0.0 -3.7 -0.2 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50 -0.5 -1.0 -2.2 +0.2 -0.0
carbon source Ying_all64 rep C; time point 1 +0.1 -0.1 -3.5 -0.2 +0.3
carbon source Ying_all64 rep A; time point 1 +0.5 -0.2 -3.8 -0.2 +0.5
carbon source Ying_AminoAcid20 rep A; time point 2 +0.3 +0.1 -3.8 -0.1 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50 -0.2 -1.1 -2.5 +0.5 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 -0.2 -1.1 -2.2 +0.4 +0.0
carbon source Ying_AminoAcid20 rep B; time point 3 +0.3 -0.0 -3.1 -0.2 +0.3
carbon source Ying_AminoAcid20 rep A; time point 3 +0.1 +0.1 -3.3 -0.1 +0.4
carbon source Ying_Others16 rep C; time point 2 +0.2 +0.5 -3.4 -0.0 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 +0.2 -1.0 -2.2 +0.4 +0.1
carbon source Ying_Others16 rep B; time point 2 -0.1 +0.5 -3.3 +0.1 +0.3
carbon source Ying_sugar7 rep C; time point 3 +0.2 -0.2 -2.5 -0.4 +0.6
carbon source Ying_Others16 rep A; time point 3 -0.2 +0.6 -3.0 +0.1 +0.4
carbon source Ying_Others16 rep A; time point 1 -0.5 +0.4 -2.4 +0.0 +0.6
carbon source Ying_Others16 rep C; time point 3 +0.0 +0.6 -2.8 -0.0 +0.4
carbon source Ying_Others16 rep A; time point 2 +0.3 +0.6 -3.4 -0.0 +0.8
stress Aluminum potassium sulfate dodecahydrate 1 mM, aerobic -0.2 +0.9 +1.7 +0.6 -0.3
stress dichromate 5 uM, aerobic -0.6 +0.9 +2.1 +0.7 -0.1
stress dichromate 5 uM, aerobic +0.3 +0.8 +2.0 +0.7 -0.1
stress dichromate 5 uM, aerobic +0.3 +0.8 +2.1 +0.5 +0.4
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