Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_16020 and IAI47_16025 are separated by 253 nucleotidesIAI47_16025 and IAI47_16030 are separated by 184 nucleotidesIAI47_16030 and IAI47_16035 overlap by 25 nucleotidesIAI47_16035 and IAI47_16040 overlap by 14 nucleotides IAI47_16020: IAI47_16020 - MFS transporter, at 3,383,328 to 3,384,506 _16020 IAI47_16025: IAI47_16025 - HTH-type transcriptional regulator SgrR, at 3,384,760 to 3,386,421 _16025 IAI47_16030: IAI47_16030 - thiamine ABC transporter substrate binding subunit, at 3,386,606 to 3,387,592 _16030 IAI47_16035: IAI47_16035 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 3,387,568 to 3,389,175 _16035 IAI47_16040: IAI47_16040 - thiamine ABC transporter ATP-binding protein ThiQ, at 3,389,162 to 3,389,863 _16040
Group Condition IAI47_16020 IAI47_16025 IAI47_16030 IAI47_16035 IAI47_16040
stress dichromate 5 uM, aerobic +0.1 +0.1 -0.3 -0.6 -0.3
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.2 -0.1 +0.1 -1.0
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 +0.3 -0.1 +0.0 -0.8
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 +0.1 -0.0 -0.9 +0.2
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.4 +0.0 -0.0 -0.3 -0.5
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 -0.1 +0.2 -0.5 +0.2
stress copper (II) chloride 2 uM, anaerobic -0.0 -0.1 +0.5 +0.2 -0.5
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.4 -0.0 -0.2 +0.8
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 -0.2 +0.3 +0.4 -0.2
stress copper (II) chloride 2 uM, anaerobic +0.5 +0.4 -0.2 -0.2 -0.1
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.2 +0.3 +0.2 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 +0.0 -0.3 -0.2 +0.8
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.3 -0.2 +0.4 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 +0.2 +0.3 +0.2 +0.4 -0.4
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.0 +0.1 +0.4 +0.6
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 -0.1 +0.3 +0.7 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 -0.2 +0.0 +0.3 +0.5
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.2 +0.5 +0.3 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.1 +0.5 -0.1 +0.5
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.1 -0.1 +0.5 +0.4
nitrogen source nitrogen source nitrite 0.5mM -0.1 +0.1 +0.2 +0.6 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.3 -0.0 +0.2 +0.5
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 +0.2 -0.0 +0.5 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.0 -0.1 +0.3 +0.6 +0.5
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.2 +0.1 +0.6 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 +0.1 -0.2 +0.3 +0.8
carbon source Ying_Others16 rep A; time point 3 +0.1 +0.0 +0.3 +0.4 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.1 +0.3 +0.2 +0.6
carbon source Ying_Others16 rep B; time point 3 +0.0 +0.1 +0.2 +0.6 +0.7
carbon source Ying_Others16 rep C; time point 3 +0.0 +0.1 +0.2 +0.7 +0.7
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IAI47_16025
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IAI47_16040
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