Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_15815 and IAI47_15820 are separated by 514 nucleotidesIAI47_15820 and IAI47_15825 are separated by 179 nucleotidesIAI47_15825 and IAI47_15830 overlap by 4 nucleotidesIAI47_15830 and IAI47_15835 overlap by 19 nucleotides IAI47_15815: IAI47_15815 - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 3,338,097 to 3,338,861 _15815 IAI47_15820: IAI47_15820 - aromatic amino acid transporter AroP, at 3,339,376 to 3,340,731 _15820 IAI47_15825: IAI47_15825 - MFS transporter, at 3,340,911 to 3,342,323 _15825 IAI47_15830: IAI47_15830 - family 43 glycosylhydrolase, at 3,342,320 to 3,343,279 _15830 IAI47_15835: IAI47_15835 - beta-lactamase regulator AmpE, at 3,343,261 to 3,344,115 _15835
Group Condition IAI47_15815 IAI47_15820 IAI47_15825 IAI47_15830 IAI47_15835
stress copper (II) chloride 2 uM, anaerobic -0.9 +0.1 -0.3 -0.2 +0.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 -0.1 +0.0 -0.4 +0.2
carbon source Ying_AminoAcid20 rep C; time point 3 -0.2 -0.7 -0.1 +0.3 -0.3
carbon source Ying_Others16 rep C; time point 3 -0.9 -0.3 +0.1 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.0 -0.2 -0.2 +0.1 -1.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.1 +0.3 -0.2 -0.1 -1.5
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.5 -0.7 +0.1 -0.2 -0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.0 +0.1 -0.1 +0.1 -1.2
nitrogen source nitrogen source Ammonium chloride 20mM -0.7 +0.2 +0.0 +0.1 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.8 -0.0 -0.2 +0.0 -0.5
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.5 -0.2 -0.0 +0.1 -1.3
nitrogen source nitrogen source nitrite 0.5mM -0.7 +0.1 -0.0 +0.2 +0.6
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.3 +0.1 +0.0 +0.0 -1.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.9 -0.2 -0.2 +0.1 -0.3
nitrogen source nitrogen source nitrite 0.5mM -0.5 +0.1 +0.1 +0.2 +0.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.1 -0.3 -0.0 -0.0 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.0 -0.3 -0.3 +0.2 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.1 -0.3 -0.1 +0.2 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.5 -0.3 -0.2 +0.0 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 +1.1 -0.2 -0.1 +0.2 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.6 -0.2 +0.0 -0.0 -0.4
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.3 -0.1 -0.2 +0.1 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.5 -0.0 -0.2 +0.1 -0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.4 -0.1 -0.2 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.3 -0.1 -0.0 +0.2 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.5 -0.1 -0.1 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.7 +0.4 +0.1 +0.3 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.7 +0.0 -0.2 +0.2 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.7 +0.2 -0.2 +0.3 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.8 +0.3 -0.3 -0.0 +0.1
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IAI47_15815
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IAI47_15820
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IAI47_15830
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IAI47_15835
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