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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_15690 and IAI47_15695 are separated by 234 nucleotides
IAI47_15695 and IAI47_15700 are separated by 0 nucleotides
IAI47_15700 and IAI47_15705 are separated by 181 nucleotides
IAI47_15705 and IAI47_15710 are separated by 102 nucleotides
IAI47_15690: IAI47_15690 - hypoxanthine phosphoribosyltransferase, at 3,307,957 to 3,308,493
_15690
IAI47_15695: IAI47_15695 - cystathionine gamma-synthase family protein, at 3,308,728 to 3,310,011
_15695
IAI47_15700: IAI47_15700 - multicopper oxidase CueO, at 3,310,012 to 3,311,625
_15700
IAI47_15705: IAI47_15705 - YacC family pilotin-like protein, at 3,311,807 to 3,312,154
_15705
IAI47_15710: IAI47_15710 - polyamine aminopropyltransferase, at 3,312,257 to 3,313,120
_15710
Group
Condition
IAI47
_15690
IAI47
_15695
IAI47
_15700
IAI47
_15705
IAI47
_15710
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
+0.2
-4.8
-0.4
+0.2
stress
Nickel (II) chloride 40 uM, aerobic
+0.2
+0.1
-2.2
+0.4
+0.0
stress
Nickel (II) chloride 40 uM, aerobic
+0.2
+0.1
-1.9
+0.2
-0.0
stress
Nickel (II) chloride 40 uM, aerobic
+0.4
-0.0
-2.2
+0.3
-0.0
stress
copper (II) chloride 5 uM, aerobic
+0.7
+0.1
-1.8
+0.1
-0.0
stress
copper (II) chloride 5 uM, aerobic
+0.3
+0.1
-1.5
+0.5
-0.0
stress
copper (II) chloride 2 uM, anaerobic
+0.1
+0.2
-1.7
+0.4
+0.4
stress
copper (II) chloride 2 uM, anaerobic
-0.4
+0.8
-0.8
+0.4
-0.2
stress
copper (II) chloride 5 uM, aerobic
+0.6
+0.3
-1.6
+0.5
-0.1
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
-0.0
-0.4
+0.6
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
+0.4
-1.3
+0.2
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.5
-0.2
-0.1
-0.4
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.3
-0.1
+0.1
-0.5
-0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.2
-0.0
+0.2
-0.6
+0.2
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.7
-0.1
-0.0
-0.4
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.6
+0.1
-0.3
-0.0
-0.0
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.2
+0.2
-0.1
-0.3
+0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.8
-0.2
-0.3
+0.2
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.7
+0.1
-0.1
+0.1
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.3
+0.2
+0.2
-0.1
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.5
+0.1
+0.2
-0.3
+0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.8
+0.1
-0.0
-0.2
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.8
-0.2
+0.2
-0.1
+0.0
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.8
+0.1
+0.0
-0.1
+0.2
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.3
+0.2
+0.3
+0.0
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.4
+0.2
+0.1
+0.1
+0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.7
+0.3
-0.2
+0.1
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.4
+0.3
+0.1
-0.2
+0.4
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.6
+0.1
+0.2
+0.2
+0.2
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+2.1
+0.1
+0.0
+0.0
+0.3
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