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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_15050 and IAI47_15055 are separated by 413 nucleotides
IAI47_15055 and IAI47_15060 are separated by 36 nucleotides
IAI47_15060 and IAI47_15065 are separated by 167 nucleotides
IAI47_15065 and IAI47_15070 are separated by 81 nucleotides
IAI47_15050: IAI47_15050 - hypothetical protein, at 3,174,559 to 3,174,777
_15050
IAI47_15055: IAI47_15055 - ATP-dependent RNA helicase DbpA, at 3,175,191 to 3,176,573
_15055
IAI47_15060: IAI47_15060 - NirD/YgiW/YdeI family stress tolerance protein, at 3,176,610 to 3,177,002
_15060
IAI47_15065: IAI47_15065 - chemotaxis protein CheV, at 3,177,170 to 3,178,132
_15065
IAI47_15070: IAI47_15070 - hypothetical protein, at 3,178,214 to 3,178,363
_15070
Group
Condition
IAI47
_15050
IAI47
_15055
IAI47
_15060
IAI47
_15065
IAI47
_15070
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.6
-0.4
+0.3
-0.2
-1.5
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.4
-0.4
-0.0
-0.6
stress
copper (II) chloride 2 uM, anaerobic
-0.5
-0.1
-0.6
+0.1
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.7
+0.2
-0.7
-0.1
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
-0.5
-0.5
-0.0
-0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
+0.1
-0.3
-0.1
-0.6
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.2
-0.4
-0.3
-0.3
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.6
+0.2
-0.3
-0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.4
-0.4
+0.1
-0.7
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.4
-0.6
+0.1
-0.6
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
+0.2
-0.5
+0.2
-0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.4
-0.1
+0.4
-1.0
stress
copper (II) chloride 2 uM, anaerobic
-0.2
-0.4
-0.4
+0.3
+0.1
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
+0.5
-0.3
-0.1
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
-0.1
-0.4
+0.2
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.4
-0.5
-0.1
-0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
+0.2
-0.3
-0.1
+0.4
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.6
-0.5
-0.2
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.4
-0.4
-0.3
+0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
+0.3
-0.2
+0.1
+0.5
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.2
-0.1
-0.3
+0.7
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
+0.6
-0.3
+0.1
-0.3
stress
Manganese (II) chloride tetrahydrate 50 uM, anaerobic
+0.3
-0.4
-0.1
+0.1
+0.6
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.3
+0.3
+0.1
+0.4
stress
Uranyl Acetate Dihydrate 200 uM, anaerobic
+0.4
+0.2
-0.1
-0.2
+0.5
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
-0.3
-0.0
+0.2
+0.8
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.4
-0.2
+0.0
+0.4
carbon source
Ying_sugar7 rep C; time point 2
+0.3
+0.2
+0.2
-0.3
+0.5
stress
copper (II) chloride 2 uM, anaerobic
-0.1
+0.4
+0.4
+0.7
-0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.0
+0.4
+0.3
+0.3
+0.7
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