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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_15035 and IAI47_15040 are separated by 87 nucleotides
IAI47_15040 and IAI47_15045 are separated by 90 nucleotides
IAI47_15045 and IAI47_15050 are separated by 192 nucleotides
IAI47_15050 and IAI47_15055 are separated by 413 nucleotides
IAI47_15035: IAI47_15035 - cyanate transporter, at 3,170,767 to 3,171,939
_15035
IAI47_15040: IAI47_15040 - LysR family transcriptional regulator, at 3,172,027 to 3,172,887
_15040
IAI47_15045: IAI47_15045 - amidohydrolase family protein, at 3,172,978 to 3,174,366
_15045
IAI47_15050: IAI47_15050 - hypothetical protein, at 3,174,559 to 3,174,777
_15050
IAI47_15055: IAI47_15055 - ATP-dependent RNA helicase DbpA, at 3,175,191 to 3,176,573
_15055
Group
Condition
IAI47
_15035
IAI47
_15040
IAI47
_15045
IAI47
_15050
IAI47
_15055
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
-0.1
-0.4
-0.2
-0.4
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.0
+0.2
-0.6
-0.4
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.4
-0.2
-0.3
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-0.4
+0.1
+0.1
-0.4
+0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.5
-0.2
-0.1
-0.5
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.6
+0.2
+0.1
+0.3
-0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
+0.1
+0.4
+0.1
-0.4
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.4
-0.2
-0.0
-0.5
+0.3
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.1
+0.3
-0.6
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
+0.4
+0.1
+0.2
-0.5
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50
-0.3
-0.2
+0.4
-0.1
+0.3
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.7
+0.5
+0.3
+0.1
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.1
+0.5
+0.3
-0.7
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50
-0.3
+0.2
-0.1
-0.1
+0.5
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.4
+0.4
-0.3
+0.0
-0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
+0.3
+0.2
-0.5
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.2
+0.2
-0.2
+0.4
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.3
+0.5
-0.2
-0.1
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.6
+0.0
-0.4
+0.2
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
+0.1
-0.1
+0.3
+0.4
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.6
+0.2
-0.4
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50
-0.1
+0.5
+0.2
-0.2
+0.2
stress
copper (II) chloride 2 uM, anaerobic
+0.1
-0.2
+0.4
-0.1
+0.4
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
+0.5
+0.1
+0.3
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
+0.1
+0.4
-0.2
+0.2
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
+0.2
+0.2
-0.3
+0.5
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
-0.2
+0.6
+0.3
-0.1
+0.4
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.1
+0.2
+0.4
+0.6
survival
Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.6
+0.2
+0.3
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.8
+0.2
+0.5
+0.1
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IAI47_15045
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IAI47_15055
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