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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_14420 and IAI47_14425 are separated by 34 nucleotides
IAI47_14425 and IAI47_14430 are separated by 557 nucleotides
IAI47_14430 and IAI47_14435 are separated by 223 nucleotides
IAI47_14435 and IAI47_14440 are separated by 58 nucleotides
IAI47_14420: IAI47_14420 - multidrug/biocide efflux PACE transporter, at 3,044,688 to 3,045,119
_14420
IAI47_14425: IAI47_14425 - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 3,045,154 to 3,046,920
_14425
IAI47_14430: IAI47_14430 - Kef family K(+) transporter, at 3,047,478 to 3,049,172
_14430
IAI47_14435: IAI47_14435 - inosine/guanosine kinase, at 3,049,396 to 3,050,697
_14435
IAI47_14440: IAI47_14440 - ferrochelatase, at 3,050,756 to 3,051,715
_14440
Group
Condition
IAI47
_14420
IAI47
_14425
IAI47
_14430
IAI47
_14435
IAI47
_14440
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
-0.2
-0.6
+0.1
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.1
-0.3
-0.2
-0.4
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-0.0
-0.2
-0.2
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-0.1
-0.2
-0.3
+0.0
-0.5
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.1
-0.6
-0.2
-0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
-0.2
-0.1
-0.3
+0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.1
-0.6
-0.0
+0.0
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
-0.0
-0.5
+0.0
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
-0.4
+0.1
-0.3
+0.1
-0.4
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.1
-0.1
+0.2
-0.4
nitrogen source
Ammonium chloride (N)
-0.4
-0.2
-0.3
+0.0
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+0.2
+0.1
-0.6
+0.2
-0.4
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
+0.2
-0.4
-0.1
+0.2
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.0
+0.2
-0.2
-0.1
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.4
+0.2
-0.5
+0.1
-0.3
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
+0.3
-0.6
+0.1
+0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
-0.0
-0.3
+0.3
-0.2
survival
Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.4
-0.0
-0.3
+0.2
-0.3
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.1
-0.6
+0.2
+0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.0
-0.3
-0.0
+0.6
stress
copper (II) chloride 2 uM, anaerobic
+0.1
+0.4
-0.4
+0.1
+0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.3
-0.2
+0.2
+0.4
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
-0.2
-0.3
+0.2
+0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
+0.2
-0.3
+0.0
+0.4
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.1
+0.5
-0.2
+0.1
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
+0.4
+0.0
+0.2
+0.1
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.2
+0.2
-0.1
+0.2
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.6
+0.5
-0.3
+0.4
-0.2
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
+0.2
+0.2
+0.1
+0.3
stress
copper (II) chloride 2 uM, anaerobic
+0.6
-0.0
+0.7
+0.2
-0.2
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IAI47_14430
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IAI47_14435
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IAI47_14440
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