Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_13925 and IAI47_13930 are separated by 6 nucleotidesIAI47_13930 and IAI47_13935 are separated by 29 nucleotidesIAI47_13935 and IAI47_13940 are separated by 112 nucleotidesIAI47_13940 and IAI47_13945 are separated by 172 nucleotides IAI47_13925: IAI47_13925 - tRNA-Met, at 2,945,346 to 2,945,422 _13925 IAI47_13930: IAI47_13930 - tRNA-Gln, at 2,945,429 to 2,945,503 _13930 IAI47_13935: IAI47_13935 - tRNA-Gln, at 2,945,533 to 2,945,607 _13935 IAI47_13940: IAI47_13940 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 2,945,720 to 2,946,892 _13940 IAI47_13945: IAI47_13945 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 2,947,065 to 2,948,489 _13945
Group Condition IAI47_13925 IAI47_13930 IAI47_13935 IAI47_13940 IAI47_13945
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -3.2 N.D. -1.1 N.D. -0.1
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -4.4 N.D. +0.4 N.D. -0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -2.4 N.D. -1.5 N.D. +0.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 N.D. -2.8 N.D. -0.3
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -2.0 N.D. -1.5 N.D. -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 -2.6 N.D. -0.7 N.D. -0.1
stress copper (II) chloride 2 uM, anaerobic -1.1 N.D. -1.9 N.D. -0.3
stress copper (II) chloride 2 uM, anaerobic -0.9 N.D. -2.7 N.D. +0.3
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -2.2 N.D. -0.9 N.D. -0.1
stress Manganese (II) chloride tetrahydrate 50 uM, aerobic -1.4 N.D. -1.8 N.D. +0.1
nitrogen source nitrogen source nitrate 5mM -3.2 N.D. -0.0 N.D. +0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -3.1 N.D. +0.0 N.D. +0.4
carbon source Ying_all64 rep B; time point 3 -1.9 N.D. -1.0 N.D. +0.5
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -2.5 N.D. +1.0 N.D. +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 -0.7 N.D. +3.1 N.D. +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.2 N.D. +1.8 N.D. +0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.1 N.D. +2.1 N.D. -0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +2.1 N.D. +0.8 N.D. +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.5 N.D. +1.8 N.D. -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +2.4 N.D. +1.2 N.D. -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.0 N.D. +2.4 N.D. -0.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.4 N.D. +1.9 N.D. +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.9 N.D. +2.7 N.D. +0.1
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.6 N.D. +2.1 N.D. +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.1 N.D. +2.8 N.D. +0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.7 N.D. +2.1 N.D. +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.7 N.D. +2.5 N.D. +0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.7 N.D. +2.7 N.D. -0.0
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +2.6 N.D. +2.1 N.D. -0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +3.5 N.D. +2.9 N.D. -0.1
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IAI47_13925
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IAI47_13930
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IAI47_13940
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IAI47_13945
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