Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_13870 and IAI47_13875 are separated by 152 nucleotidesIAI47_13875 and IAI47_13880 are separated by 327 nucleotidesIAI47_13880 and IAI47_13885 are separated by 62 nucleotidesIAI47_13885 and IAI47_13890 are separated by 7 nucleotides IAI47_13870: IAI47_13870 - glutamine--tRNA ligase, at 2,934,543 to 2,936,210 _13870 IAI47_13875: IAI47_13875 - PTS transporter subunit EIIC, at 2,936,363 to 2,938,390 _13875 IAI47_13880: IAI47_13880 - glucosamine-6-phosphate deaminase, at 2,938,718 to 2,939,518 _13880 IAI47_13885: IAI47_13885 - N-acetylglucosamine-6-phosphate deacetylase, at 2,939,581 to 2,940,729 _13885 IAI47_13890: IAI47_13890 - ROK family transcriptional regulator, at 2,940,737 to 2,941,957 _13890
Group Condition IAI47_13870 IAI47_13875 IAI47_13880 IAI47_13885 IAI47_13890
carbon source Ying_Others16 rep B; time point 2 N.D. +0.1 -4.4 -4.5 +0.3
carbon source Ying_Others16 rep C; time point 2 N.D. +0.0 -4.4 -4.4 +0.3
carbon source Ying_Others16 rep A; time point 2 N.D. +0.1 -4.5 -3.7 +0.3
carbon source Ying_Others16 rep B; time point 3 N.D. +0.0 -4.5 -2.5 -0.3
carbon source Ying_Others16 rep C; time point 3 N.D. +0.1 -4.4 -2.4 -0.3
carbon source Ying_Others16 rep A; time point 3 N.D. +0.1 -4.4 -2.4 -0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.2 -0.1 -4.1 -2.7
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.1 +0.2 -4.2 -2.7
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.1 -0.0 -4.5 -2.0
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.2 +0.1 -4.3 -2.2
carbon source Ying_sugar7 rep C; time point 2 N.D. +0.1 -4.0 -1.8 -0.5
carbon source Ying_Others16 rep C; time point 1 N.D. -0.0 -2.9 -3.6 +0.5
carbon source Ying_all64 rep A; time point 3 N.D. +0.0 -4.3 -1.5 -0.1
carbon source Ying_sugar7 rep B; time point 2 N.D. +0.1 -4.7 -1.0 -0.1
carbon source Ying_Others16 rep B; time point 1 N.D. -0.1 -3.1 -3.2 +0.6
carbon source Ying_sugar7 rep A; time point 3 N.D. +0.2 -4.5 -1.3 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.2 -0.1 -4.3 -0.8
carbon source Ying_all64 rep B; time point 3 N.D. +0.1 -4.2 -1.1 +0.1
carbon source Ying_all64 rep C; time point 2 N.D. +0.1 -3.5 -1.5 +0.0
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.1 -0.1 -3.5 -1.2
carbon source Ying_sugar7 rep A; time point 2 N.D. +0.1 -4.8 -0.3 +0.1
carbon source Ying_sugar7 rep B; time point 1 N.D. +0.0 -4.0 -1.2 +0.4
carbon source Ying_all64 rep B; time point 2 N.D. +0.1 -4.1 -0.7 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.2 -0.0 -2.6 -2.2
carbon source Ying_sugar7 rep B; time point 3 N.D. +0.3 -4.5 -0.4 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.2 +0.5 -4.4 -0.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50 N.D. -0.1 +0.3 -3.6 -1.0
carbon source Ying_sugar7 rep A; time point 1 N.D. +0.1 -3.9 -0.9 +0.4
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.2 +0.2 -3.1 -1.3
carbon source Ying_sugar7 rep C; time point 3 N.D. +0.3 -4.5 +0.5 +0.3
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IAI47_13870
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IAI47_13875
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IAI47_13885
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IAI47_13890
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