Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_13795 and IAI47_13800 overlap by 11 nucleotidesIAI47_13800 and IAI47_13805 overlap by 7 nucleotidesIAI47_13805 and IAI47_13810 are separated by 160 nucleotidesIAI47_13810 and IAI47_13815 are separated by 18 nucleotides IAI47_13795: IAI47_13795 - 5-oxoprolinase subunit PxpA, at 2,921,537 to 2,922,274 _13795 IAI47_13800: IAI47_13800 - biotin-dependent carboxyltransferase family protein, at 2,922,264 to 2,923,193 _13800 IAI47_13805: IAI47_13805 - 5-oxoprolinase subunit PxpB, at 2,923,187 to 2,923,843 _13805 IAI47_13810: IAI47_13810 - type 2 GTP cyclohydrolase I, at 2,924,004 to 2,924,747 _13810 IAI47_13815: IAI47_13815 - deoxyribodipyrimidine photo-lyase, at 2,924,766 to 2,926,190 _13815
Group Condition IAI47_13795 IAI47_13800 IAI47_13805 IAI47_13810 IAI47_13815
nitrogen source TNT (N) -1.4 -0.5 -0.3 +0.0 -0.0
carbon source Ying_sugar7 rep C; time point 2 -1.6 -0.1 -0.2 -0.1 -0.1
carbon source Ying_sugar7 rep A; time point 2 -1.4 -0.1 -0.5 +0.0 -0.0
nitrogen source TNT (N) -1.1 -0.5 -0.5 +0.1 -0.0
nitrogen source TNT (N) -1.2 -0.4 -0.2 -0.0 -0.1
carbon source Ying_Nucleobase14 rep A; time point 1 -1.3 -0.0 -0.3 -0.1 -0.1
nitrogen source Ammonium chloride (N) -1.2 -0.3 +0.0 -0.2 +0.0
carbon source Ying_Others16 rep A; time point 2 -0.9 -0.2 -0.4 -0.2 +0.0
nitrogen source TNT (N) -0.9 -0.4 -0.4 +0.0 +0.0
carbon source Ying_Nucleobase14 rep A; time point 2 -1.3 +0.1 -0.3 +0.0 +0.1
carbon source Ying_sugar7 rep C; time point 1 -1.2 -0.0 -0.3 -0.1 +0.1
carbon source Ying_all64 rep A; time point 3 -1.8 -0.2 +0.3 +0.0 +0.2
carbon source Ying_Nucleobase14 rep C; time point 2 -1.2 -0.1 -0.1 -0.2 +0.1
carbon source Ying_Nucleobase14 rep B; time point 1 -1.4 +0.1 -0.1 -0.0 -0.0
carbon source Ying_all64 rep C; time point 3 -1.3 -0.4 -0.0 +0.1 +0.2
carbon source Ying_all64 rep C; time point 1 -1.3 +0.1 -0.1 -0.1 -0.1
carbon source Ying_Others16 rep A; time point 3 -1.0 -0.3 -0.3 -0.0 +0.2
carbon source Ying_AminoAcid20 rep C; time point 3 -1.4 -0.1 -0.0 -0.0 +0.1
carbon source Ying_sugar7 rep C; time point 3 -1.7 -0.2 +0.2 +0.1 +0.2
stress copper (II) chloride 2 uM, anaerobic -0.1 -0.3 -0.9 +0.2 -0.2
carbon source Ying_Others16 rep B; time point 3 -1.1 -0.2 +0.1 -0.1 +0.0
carbon source Ying_sugar7 rep A; time point 3 -1.3 -0.2 +0.1 +0.0 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 -0.1 -0.7 +0.0 +0.2
carbon source Ying_Nucleobase14 rep B; time point 3 -1.5 -0.1 +0.3 +0.1 +0.1
carbon source Ying_Others16 rep C; time point 3 -1.0 -0.3 +0.2 -0.1 +0.0
carbon source Ying_Nucleobase14 rep A; time point 3 -1.2 -0.1 +0.2 -0.0 +0.1
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.7 -0.4 -0.1 -0.1 +0.4
carbon source Ying_all64 rep B; time point 3 -1.5 +0.1 +0.3 +0.1 +0.1
carbon source Ying_all64 rep B; time point 2 -1.1 +0.2 -0.1 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 -0.3 +0.6 -0.1 -0.4
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