Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_13270 and IAI47_13275 are separated by 326 nucleotidesIAI47_13275 and IAI47_13280 are separated by 15 nucleotidesIAI47_13280 and IAI47_13285 are separated by 208 nucleotidesIAI47_13285 and IAI47_13290 are separated by 1 nucleotides IAI47_13270: IAI47_13270 - histidine utilization repressor, at 2,805,507 to 2,806,262 _13270 IAI47_13275: IAI47_13275 - histidine ammonia-lyase, at 2,806,589 to 2,808,139 _13275 IAI47_13280: IAI47_13280 - urocanate hydratase, at 2,808,155 to 2,809,840 _13280 IAI47_13285: IAI47_13285 - amidohydrolase, at 2,810,049 to 2,811,206 _13285 IAI47_13290: IAI47_13290 - DNA-binding protein YbiB, at 2,811,208 to 2,812,176 _13290
Group Condition IAI47_13270 IAI47_13275 IAI47_13280 IAI47_13285 IAI47_13290
stress dichromate 5 uM, aerobic -0.1 -0.1 -0.0 -0.3 -3.0
stress dichromate 5 uM, aerobic -0.2 +0.1 -0.2 -0.5 -2.6
stress dichromate 5 uM, aerobic -0.1 -0.1 +0.2 -0.4 -2.3
nitrogen source nitrogen source nitrite 1mM -0.7 -0.0 +0.0 -0.2 -1.4
nitrogen source nitrogen source nitrite 1mM -0.6 +0.0 +0.1 -0.1 -1.5
nitrogen source nitrogen source nitrate 5mM -0.2 -0.1 -0.1 -0.1 -1.4
nitrogen source nitrogen source nitrate 20mM -0.3 +0.0 -0.0 +0.0 -1.1
carbon source Ying_AminoAcid20 rep A; time point 3 -0.2 -0.3 -1.0 -0.0 +0.1
carbon source Ying_Others16 rep B; time point 3 -1.0 +0.2 +0.0 -0.4 -0.1
nitrogen source nitrogen source nitrite 0.5mM -0.3 -0.1 +0.0 +0.2 -1.0
nitrogen source nitrogen source nitrate 5mM -0.3 +0.0 +0.0 +0.1 -1.1
carbon source Ying_AminoAcid20 rep B; time point 3 -0.1 -0.3 -0.9 +0.1 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.5 +0.1 +0.1 +0.2 -1.0
nitrogen source nitrogen source nitrate 20mM +0.0 +0.1 +0.0 -0.0 -1.2
carbon source Ying_AminoAcid20 rep C; time point 3 -0.1 -0.3 -0.9 +0.2 +0.1
carbon source Ying_Others16 rep C; time point 3 -0.9 +0.2 -0.1 +0.1 -0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.3 -0.2 -0.5 -0.3
stress copper (II) chloride 2 uM, anaerobic -0.8 -0.0 +0.7 -0.1 -0.2
stress copper (II) chloride 2 uM, anaerobic +0.3 -0.1 -0.1 -0.8 +0.2
carbon source Ying_sugar7 rep A; time point 3 -0.4 +0.2 +0.1 +0.3 -0.5
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.6 -0.2 +0.1 -0.7 -0.0
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 -0.4 +0.3 +0.3 +0.1
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 +0.1 +0.3 +0.4 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 +0.4 +0.1 -0.6 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.6 +0.2 +0.0 -0.5 -0.0
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 -0.3 +0.2 +0.3 -0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 -0.1 +0.4 +0.3 +0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 -0.1 +0.2 +0.2 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.6 +0.5 +0.1 -0.1 +0.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.9 -0.0 +0.2 +0.0 +0.1
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IAI47_13270
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