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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_13240 and IAI47_13245 are separated by 12 nucleotides
IAI47_13245 and IAI47_13250 are separated by 307 nucleotides
IAI47_13250 and IAI47_13255 overlap by 4 nucleotides
IAI47_13255 and IAI47_13260 are separated by 80 nucleotides
IAI47_13240: IAI47_13240 - ABC transporter permease subunit, at 2,799,655 to 2,800,374
_13240
IAI47_13245: IAI47_13245 - transporter substrate-binding domain-containing protein, at 2,800,387 to 2,801,235
_13245
IAI47_13250: IAI47_13250 - N-formylglutamate deformylase, at 2,801,543 to 2,802,334
_13250
IAI47_13255: IAI47_13255 - imidazolonepropionase, at 2,802,331 to 2,803,548
_13255
IAI47_13260: IAI47_13260 - formimidoylglutamate deiminase, at 2,803,629 to 2,804,984
_13260
Group
Condition
IAI47
_13240
IAI47
_13245
IAI47
_13250
IAI47
_13255
IAI47
_13260
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.1
+0.0
-0.7
-1.4
-2.1
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.1
-0.1
-0.7
-1.6
-2.0
carbon source
Ying_AminoAcid20 rep C; time point 3
+0.0
-0.0
-0.6
-1.3
-2.0
carbon source
Ying_AminoAcid20 rep A; time point 2
+0.1
-0.3
-0.8
-0.8
-1.5
carbon source
Ying_AminoAcid20 rep C; time point 2
+0.1
-0.1
-0.5
-1.1
-1.4
carbon source
Ying_AminoAcid20 rep B; time point 2
+0.1
-0.3
-0.5
-0.7
-1.6
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.2
-0.2
-0.3
-0.4
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.6
-0.4
-0.2
-0.7
+0.4
carbon source
Ying_AminoAcid20 rep B; time point 1
+0.2
-0.3
-0.3
-0.4
-0.6
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.7
+0.1
+0.2
-0.6
-0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
-0.3
-0.2
+0.2
-1.0
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
-0.5
+0.1
-0.2
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.2
-0.3
-0.0
-0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.6
-0.2
+0.7
-0.3
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
-0.5
+0.1
-0.5
+0.4
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.6
+0.2
+0.0
-1.2
-0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.3
-0.0
+0.3
-0.7
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
+0.0
-0.2
+0.1
-0.9
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.6
-0.3
+0.4
+0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.1
+0.1
+0.3
-0.9
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-0.4
-0.5
+0.2
+0.1
+0.5
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
-0.4
+0.1
+0.3
-0.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
+0.3
-0.2
+0.3
-0.7
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.7
+0.2
+0.4
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.5
-0.2
+0.8
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.4
-0.1
+0.7
+0.5
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
-0.4
+0.3
+0.3
+0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
-0.5
+0.2
+0.7
+0.5
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
+0.3
+0.0
+0.7
-0.5
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.2
+0.5
+0.1
+0.6
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IAI47_13250
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