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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_13230 and IAI47_13235 overlap by 8 nucleotides
IAI47_13235 and IAI47_13240 are separated by 8 nucleotides
IAI47_13240 and IAI47_13245 are separated by 12 nucleotides
IAI47_13245 and IAI47_13250 are separated by 307 nucleotides
IAI47_13230: IAI47_13230 - ATP-binding cassette domain-containing protein, at 2,798,119 to 2,798,913
_13230
IAI47_13235: IAI47_13235 - ABC transporter permease subunit, at 2,798,906 to 2,799,646
_13235
IAI47_13240: IAI47_13240 - ABC transporter permease subunit, at 2,799,655 to 2,800,374
_13240
IAI47_13245: IAI47_13245 - transporter substrate-binding domain-containing protein, at 2,800,387 to 2,801,235
_13245
IAI47_13250: IAI47_13250 - N-formylglutamate deformylase, at 2,801,543 to 2,802,334
_13250
Group
Condition
IAI47
_13230
IAI47
_13235
IAI47
_13240
IAI47
_13245
IAI47
_13250
nitrogen source
Ammonium chloride (N)
+0.0
-0.9
-0.0
-0.7
+0.0
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.1
-0.6
-0.4
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
-0.3
-0.2
-0.6
-0.2
stress
Manganese (II) chloride tetrahydrate 50 uM, aerobic
-0.2
-0.5
+0.0
-0.4
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
-0.5
-0.3
-0.6
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-0.2
-0.2
-0.4
-0.5
+0.2
carbon source
Ying_AminoAcid20 rep A; time point 2
+0.1
-0.1
+0.1
-0.3
-0.8
stress
copper (II) chloride 2 uM, anaerobic
-0.3
-0.6
+0.2
-0.1
-0.1
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.4
+0.2
-0.7
+0.2
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.4
-0.4
-0.4
-0.1
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.0
-0.6
-0.2
-0.2
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.2
-0.2
-0.5
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.5
+0.1
-0.1
+0.3
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.4
-0.0
+0.1
-0.1
-0.7
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
+0.4
-0.2
-0.3
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
+0.2
-0.1
-0.2
-0.5
stress
copper (II) chloride 2 uM, anaerobic
-0.7
+0.7
+0.5
-0.0
-0.3
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.3
-0.0
+0.4
+0.3
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.4
+0.5
-0.2
+0.2
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.3
+0.4
-0.3
-0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
+0.0
-0.2
-0.2
+0.4
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-0.1
+0.5
-0.4
+0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.1
+0.6
-0.4
+0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.4
+0.3
+0.2
+0.5
survival
Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.2
+0.5
+0.2
+0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
+0.2
+0.4
+0.0
-0.1
stress
copper (II) chloride 2 uM, anaerobic
+0.1
+0.4
+0.0
+0.3
+0.4
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.0
+0.5
+0.6
+0.2
+0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
+0.1
+0.5
+0.3
+0.0
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
+0.2
+0.5
+0.1
+0.2
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