Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_13195 and IAI47_13200 are separated by 319 nucleotidesIAI47_13200 and IAI47_13205 are separated by 78 nucleotidesIAI47_13205 and IAI47_13210 overlap by 4 nucleotidesIAI47_13210 and IAI47_13215 are separated by 75 nucleotides IAI47_13195: IAI47_13195 - DNA starvation/stationary phase protection protein Dps, at 2,791,793 to 2,792,296 _13195 IAI47_13200: IAI47_13200 - glutamine ABC transporter substrate-binding protein GlnH, at 2,792,616 to 2,793,362 _13200 IAI47_13205: IAI47_13205 - glutamine ABC transporter permease GlnP, at 2,793,441 to 2,794,100 _13205 IAI47_13210: IAI47_13210 - glutamine ABC transporter ATP-binding protein GlnQ, at 2,794,097 to 2,794,819 _13210 IAI47_13215: IAI47_13215 - 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF, at 2,794,895 to 2,795,827 _13215
Group Condition IAI47_13195 IAI47_13200 IAI47_13205 IAI47_13210 IAI47_13215
nitrogen source nitrogen source Ammonium chloride 20mM -4.7 -0.1 -0.0 +0.0 -0.3
nitrogen source nitrogen source nitrate 5mM -4.6 -0.1 -0.0 +0.0 -0.2
nitrogen source nitrogen source Ammonium chloride 20mM -4.6 -0.1 -0.1 +0.2 -0.2
nitrogen source nitrogen source nitrite 1mM -4.6 -0.1 +0.1 -0.0 -0.1
nitrogen source nitrogen source nitrite 0.5mM -4.6 -0.0 +0.1 +0.1 -0.3
nitrogen source nitrogen source nitrate 20mM -4.8 -0.0 +0.1 +0.2 -0.2
nitrogen source nitrogen source nitrate 20mM -4.4 -0.1 -0.1 -0.0 +0.1
nitrogen source nitrogen source nitrate 5mM -4.7 +0.1 -0.0 +0.2 -0.0
nitrogen source nitrogen source nitrite 0.5mM -4.4 +0.1 -0.1 -0.1 +0.1
nitrogen source nitrogen source nitrite 1mM -4.4 -0.1 -0.0 +0.4 -0.2
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -2.5 -0.4 -0.1 -0.1 +0.2
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.9 -0.1 -0.2 -0.6 -0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.9 -0.2 +0.2 -0.1 -0.3
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.5 +0.1 -0.1 -0.2 -0.4
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 -0.3 -0.1 -1.0 +0.1
carbon source Ying_AminoAcid20 rep B; time point 2 -1.9 +0.0 -0.2 -0.1 +0.1
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.9 +0.1 -0.1 -0.2 +0.1
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -2.3 -0.0 +0.0 -0.1 +0.5
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.9 -0.0 -0.3 +0.6 -0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.9 -0.1 -0.1 +0.2 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.8 -0.1 -0.1 +0.5 -0.1
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.6 -0.2 +0.2 -0.1 +0.1
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.2 -0.2 -0.2 +0.4 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.6 -0.1 +0.0 +0.6 +0.0
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.6 +0.2 +0.4 -0.0 +0.0
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.2 -0.2 -0.2 +0.2 +0.4
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.2 +0.1 -0.2 +0.4 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.3 +0.0 +0.2 +0.0 +0.6
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.3 +0.2 -0.5 -0.2 -0.3
stress copper (II) chloride 2 uM, anaerobic +0.1 +0.2 -0.3 +0.3 +1.3
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IAI47_13195
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IAI47_13200
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IAI47_13210
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IAI47_13215
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