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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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500 nt
IAI47_13055 and IAI47_13060 are separated by 20 nucleotides
IAI47_13060 and IAI47_13065 are separated by 16 nucleotides
IAI47_13065 and IAI47_13070 are separated by 255 nucleotides
IAI47_13070 and IAI47_13075 are separated by 88 nucleotides
IAI47_13055: IAI47_13055 - 30S ribosomal protein S6--L-glutamate ligase, at 2,759,731 to 2,760,633
_13055
IAI47_13060: IAI47_13060 - oxygen-insensitive NADPH nitroreductase, at 2,760,654 to 2,761,376
_13060
IAI47_13065: IAI47_13065 - DUF1418 family protein, at 2,761,393 to 2,761,644
_13065
IAI47_13070: IAI47_13070 - GrxA family glutaredoxin, at 2,761,900 to 2,762,163
_13070
IAI47_13075: IAI47_13075 - hypothetical protein, at 2,762,252 to 2,762,617
_13075
Group
Condition
IAI47
_13055
IAI47
_13060
IAI47
_13065
IAI47
_13070
IAI47
_13075
nitrogen source
Ammonium chloride (N)
+0.0
+0.1
-2.8
-0.5
-0.6
no stress control
Defined media control, aerobic
-0.0
-0.4
-2.6
-0.2
-0.1
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
-0.0
-2.9
+0.2
-0.3
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
+0.0
-3.2
+0.2
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
+0.1
-2.8
-0.2
+0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
+0.1
-3.1
-0.0
+0.4
stress
copper (II) chloride 2 uM, anaerobic
+0.0
-0.0
-2.6
+0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
-0.5
-1.4
+0.4
-0.9
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+0.0
-0.0
-2.7
+0.1
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.0
-0.5
-2.6
+0.6
+0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+0.1
+0.2
-2.4
+0.5
-0.0
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
+0.3
-1.8
-0.1
+0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
-0.2
-2.8
+0.1
+1.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+0.1
-0.1
-1.9
+0.6
+0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
-0.3
-2.6
+0.9
+0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.1
-2.1
+0.4
+0.5
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
+0.4
-2.2
+0.2
+0.5
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
+0.0
-1.8
+0.4
+0.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+0.3
-0.0
-1.2
+0.6
-0.5
carbon source
Ying_sugar7 rep B; time point 2
+0.1
-0.1
-1.2
-0.3
+0.9
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+0.2
+0.1
-1.6
+0.4
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
+0.4
-0.0
-1.3
+0.4
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
-0.1
-1.3
+0.8
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.1
-1.3
+1.0
+0.5
stress
dichromate 5 uM, aerobic
+0.2
-0.5
-0.6
+1.0
+0.2
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.3
-0.5
+0.6
+1.1
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
+0.3
+1.8
-0.2
+0.0
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.0
+1.9
+0.2
+0.4
stress
copper (II) chloride 2 uM, anaerobic
+0.3
+0.3
+1.6
+0.3
+0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
+0.4
+1.2
+0.6
+0.6
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