Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_13055 and IAI47_13060 are separated by 20 nucleotidesIAI47_13060 and IAI47_13065 are separated by 16 nucleotidesIAI47_13065 and IAI47_13070 are separated by 255 nucleotidesIAI47_13070 and IAI47_13075 are separated by 88 nucleotides IAI47_13055: IAI47_13055 - 30S ribosomal protein S6--L-glutamate ligase, at 2,759,731 to 2,760,633 _13055 IAI47_13060: IAI47_13060 - oxygen-insensitive NADPH nitroreductase, at 2,760,654 to 2,761,376 _13060 IAI47_13065: IAI47_13065 - DUF1418 family protein, at 2,761,393 to 2,761,644 _13065 IAI47_13070: IAI47_13070 - GrxA family glutaredoxin, at 2,761,900 to 2,762,163 _13070 IAI47_13075: IAI47_13075 - hypothetical protein, at 2,762,252 to 2,762,617 _13075
Group Condition IAI47_13055 IAI47_13060 IAI47_13065 IAI47_13070 IAI47_13075
nitrogen source Ammonium chloride (N) +0.0 +0.1 -2.8 -0.5 -0.6
no stress control Defined media control, aerobic -0.0 -0.4 -2.6 -0.2 -0.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 -0.0 -2.9 +0.2 -0.3
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.0 -3.2 +0.2 -0.1
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.1 -2.8 -0.2 +0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 +0.1 -3.1 -0.0 +0.4
stress copper (II) chloride 2 uM, anaerobic +0.0 -0.0 -2.6 +0.2 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.5 -1.4 +0.4 -0.9
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.0 -0.0 -2.7 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.0 -0.5 -2.6 +0.6 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.1 +0.2 -2.4 +0.5 -0.0
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.3 -1.8 -0.1 +0.3
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.2 -2.8 +0.1 +1.6
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 +0.1 -0.1 -1.9 +0.6 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 -0.3 -2.6 +0.9 +0.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.1 -2.1 +0.4 +0.5
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.4 -2.2 +0.2 +0.5
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 +0.0 -1.8 +0.4 +0.6
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 +0.3 -0.0 -1.2 +0.6 -0.5
carbon source Ying_sugar7 rep B; time point 2 +0.1 -0.1 -1.2 -0.3 +0.9
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 +0.2 +0.1 -1.6 +0.4 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 +0.4 -0.0 -1.3 +0.4 +0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 -0.1 -1.3 +0.8 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.1 -1.3 +1.0 +0.5
stress dichromate 5 uM, aerobic +0.2 -0.5 -0.6 +1.0 +0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 -0.3 -0.5 +0.6 +1.1
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 +0.3 +1.8 -0.2 +0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -0.0 +1.9 +0.2 +0.4
stress copper (II) chloride 2 uM, anaerobic +0.3 +0.3 +1.6 +0.3 +0.2
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.4 +1.2 +0.6 +0.6
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