Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_12950 and IAI47_12955 are separated by 316 nucleotidesIAI47_12955 and IAI47_12960 are separated by 87 nucleotidesIAI47_12960 and IAI47_12965 are separated by 128 nucleotidesIAI47_12965 and IAI47_12970 are separated by 130 nucleotides IAI47_12950: IAI47_12950 - ATP-dependent Clp protease adapter ClpS, at 2,740,596 to 2,740,916 _12950 IAI47_12955: IAI47_12955 - cold shock-like protein CspD, at 2,741,233 to 2,741,457 _12955 IAI47_12960: IAI47_12960 - ATP-dependent endonuclease, at 2,741,545 to 2,743,182 _12960 IAI47_12965: IAI47_12965 - lysine exporter LysO family protein, at 2,743,311 to 2,744,210 _12965 IAI47_12970: IAI47_12970 - ubiquinone-dependent pyruvate dehydrogenase, at 2,744,341 to 2,746,062 _12970
Group Condition IAI47_12950 IAI47_12955 IAI47_12960 IAI47_12965 IAI47_12970
carbon source Ying_Others16 rep B; time point 3 -1.0 -0.7 -0.1 -0.0 +0.1
carbon source Ying_Others16 rep A; time point 3 -1.1 -0.6 +0.1 +0.0 +0.0
carbon source Ying_Others16 rep C; time point 3 -1.1 -0.5 +0.0 +0.0 +0.1
carbon source Ying_Others16 rep B; time point 2 -0.7 -0.4 -0.1 +0.0 -0.2
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -1.0 -0.1 +0.1 -0.1
nitrogen source Ammonium chloride (N) -0.5 -0.7 -0.1 -0.2 +0.2
carbon source Ying_Others16 rep C; time point 2 -0.9 -0.3 +0.0 +0.1 -0.1
carbon source Ying_sugar7 rep C; time point 3 -1.3 +0.1 +0.1 -0.2 +0.1
nitrogen source TNT (N) -1.0 -0.2 -0.0 +0.1 +0.1
nitrogen source TNT (N) -1.3 -0.0 +0.1 +0.2 +0.1
carbon source Ying_sugar7 rep B; time point 3 -1.1 +0.0 -0.0 -0.0 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 -0.4 -0.6 +0.4 -0.2
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.6 -0.5 +0.0 +0.2 +0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.2 -1.2 +0.5 +0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.0 -1.0 +0.4 +0.1
carbon source Ying_sugar7 rep C; time point 2 -0.5 +0.6 +0.0 -0.2 +0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 +0.5 -1.4 +0.4 +0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.1 -1.0 +0.8 +0.0
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.3 -0.7 +0.3 +0.3
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.0 -1.1 +0.1 +0.5 +0.4
stress copper (II) chloride 2 uM, anaerobic -0.5 +0.6 -0.0 +0.2 -0.2
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.8 -0.5 +0.4 -0.0 -0.3
stress dichromate 5 uM, aerobic +0.7 +0.2 -0.2 -0.3 -0.1
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 +0.4 +0.1 +0.4 -0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.8 -0.6 +0.4 -0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 +0.6 -0.2 -0.3 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.4 +0.5 -0.2 +0.4 +0.1
stress copper (II) chloride 2 uM, anaerobic +0.1 +0.9 +0.1 -0.1 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 +0.8 +0.4 +0.2 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.4 +0.6 -0.1 +0.5 -0.0
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IAI47_12950
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IAI47_12955
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IAI47_12965
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IAI47_12970
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