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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_12095 and IAI47_12100 are separated by 140 nucleotides
IAI47_12100 and IAI47_12105 are separated by 13 nucleotides
IAI47_12105 and IAI47_12110 are separated by 573 nucleotides
IAI47_12110 and IAI47_12115 are separated by 415 nucleotides
IAI47_12095: IAI47_12095 - 23S rRNA accumulation protein YceD, at 2,559,548 to 2,560,069
_12095
IAI47_12100: IAI47_12100 - septum formation inhibitor Maf, at 2,560,210 to 2,560,797
_12100
IAI47_12105: IAI47_12105 - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 2,560,811 to 2,561,767
_12105
IAI47_12110: IAI47_12110 - ribonuclease E, at 2,562,341 to 2,565,793
_12110
IAI47_12115: IAI47_12115 - flagellar hook-associated protein FlgL, at 2,566,209 to 2,567,174
_12115
Group
Condition
IAI47
_12095
IAI47
_12100
IAI47
_12105
IAI47
_12110
IAI47
_12115
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.1
-1.0
-1.3
-0.9
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.1
-0.5
-1.5
-0.4
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.3
-0.6
+0.1
-1.7
stress
Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
N.D.
+0.0
-0.2
-1.4
-0.8
nitrogen source
TNT (N)
N.D.
+0.3
-0.4
-2.2
+0.0
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.6
-1.1
+0.5
-0.9
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.2
-1.1
+0.2
-1.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-1.0
-0.4
+0.5
-1.0
no stress control
Defined media control, anaerobic
N.D.
+0.3
-0.4
-1.6
+0.0
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.7
-0.4
-1.4
-0.5
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.0
-0.6
+0.7
-1.4
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.2
-0.9
+0.6
-0.7
carbon source
Ying_AminoAcid20 rep C; time point 3
N.D.
+0.2
-0.7
-1.1
+0.5
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.3
-0.4
+0.9
-1.3
stress
copper (II) chloride 2 uM, anaerobic
N.D.
-0.3
-0.1
-1.4
+1.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.3
-0.7
+1.3
-0.9
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.0
-0.8
+1.1
-0.7
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.3
-0.8
+1.4
-0.9
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.8
+0.0
+1.2
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
N.D.
+0.7
-0.2
-0.9
+0.6
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.5
-1.1
+1.1
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.3
-0.8
+2.2
+0.2
stress
copper (II) chloride 2 uM, anaerobic
N.D.
+0.9
-0.5
+1.4
+0.5
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
+0.2
+0.2
+1.4
+0.5
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
+0.4
+0.2
+1.2
+0.6
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.2
+0.0
+1.6
+0.6
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.3
+0.2
+1.6
+0.5
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
+0.1
+0.5
+1.3
+0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
+0.9
+0.2
+1.4
+0.6
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
+0.4
+0.5
+2.0
+0.6
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