Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_12095 and IAI47_12100 are separated by 140 nucleotidesIAI47_12100 and IAI47_12105 are separated by 13 nucleotidesIAI47_12105 and IAI47_12110 are separated by 573 nucleotidesIAI47_12110 and IAI47_12115 are separated by 415 nucleotides IAI47_12095: IAI47_12095 - 23S rRNA accumulation protein YceD, at 2,559,548 to 2,560,069 _12095 IAI47_12100: IAI47_12100 - septum formation inhibitor Maf, at 2,560,210 to 2,560,797 _12100 IAI47_12105: IAI47_12105 - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 2,560,811 to 2,561,767 _12105 IAI47_12110: IAI47_12110 - ribonuclease E, at 2,562,341 to 2,565,793 _12110 IAI47_12115: IAI47_12115 - flagellar hook-associated protein FlgL, at 2,566,209 to 2,567,174 _12115
Group Condition IAI47_12095 IAI47_12100 IAI47_12105 IAI47_12110 IAI47_12115
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.1 -1.0 -1.3 -0.9
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.1 -0.5 -1.5 -0.4
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.3 -0.6 +0.1 -1.7
stress Aluminum potassium sulfate dodecahydrate 1 mM, aerobic N.D. +0.0 -0.2 -1.4 -0.8
nitrogen source TNT (N) N.D. +0.3 -0.4 -2.2 +0.0
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.6 -1.1 +0.5 -0.9
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.2 -1.1 +0.2 -1.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -1.0 -0.4 +0.5 -1.0
no stress control Defined media control, anaerobic N.D. +0.3 -0.4 -1.6 +0.0
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.7 -0.4 -1.4 -0.5
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.0 -0.6 +0.7 -1.4
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.2 -0.9 +0.6 -0.7
carbon source Ying_AminoAcid20 rep C; time point 3 N.D. +0.2 -0.7 -1.1 +0.5
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.3 -0.4 +0.9 -1.3
stress copper (II) chloride 2 uM, anaerobic N.D. -0.3 -0.1 -1.4 +1.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.3 -0.7 +1.3 -0.9
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.0 -0.8 +1.1 -0.7
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.3 -0.8 +1.4 -0.9
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.8 +0.0 +1.2 -0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 N.D. +0.7 -0.2 -0.9 +0.6
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.5 -1.1 +1.1 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.3 -0.8 +2.2 +0.2
stress copper (II) chloride 2 uM, anaerobic N.D. +0.9 -0.5 +1.4 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +0.2 +0.2 +1.4 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +0.4 +0.2 +1.2 +0.6
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.2 +0.0 +1.6 +0.6
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.3 +0.2 +1.6 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +0.1 +0.5 +1.3 +0.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +0.9 +0.2 +1.4 +0.6
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +0.4 +0.5 +2.0 +0.6
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