Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_11950 and IAI47_11955 are separated by 146 nucleotidesIAI47_11955 and IAI47_11960 overlap by 1 nucleotidesIAI47_11960 and IAI47_11965 overlap by 8 nucleotidesIAI47_11965 and IAI47_11970 are separated by 249 nucleotides IAI47_11950: IAI47_11950 - NAD-dependent protein deacylase, at 2,529,888 to 2,530,721 _11950 IAI47_11955: IAI47_11955 - lipoprotein-releasing ABC transporter permease subunit LolE, at 2,530,868 to 2,532,112 _11955 IAI47_11960: IAI47_11960 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 2,532,112 to 2,532,816 _11960 IAI47_11965: IAI47_11965 - lipoprotein-releasing ABC transporter permease subunit LolC, at 2,532,809 to 2,534,008 _11965 IAI47_11970: IAI47_11970 - hypothetical protein, at 2,534,258 to 2,534,467 _11970
Group Condition IAI47_11950 IAI47_11955 IAI47_11960 IAI47_11965 IAI47_11970
carbon source Ying_all64 rep B; time point 3 -1.6 N.D. N.D. N.D. +0.0
carbon source Ying_all64 rep A; time point 3 -1.5 N.D. N.D. N.D. +0.1
carbon source Ying_all64 rep C; time point 3 -1.3 N.D. N.D. N.D. +0.0
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.7 N.D. N.D. N.D. -0.5
carbon source Ying_Others16 rep B; time point 3 -1.1 N.D. N.D. N.D. -0.1
carbon source Ying_OrganicAcid7 rep B; time point 3 -1.3 N.D. N.D. N.D. +0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 -1.0 N.D. N.D. N.D. -0.1
carbon source Ying_sugar7 rep C; time point 2 -1.3 N.D. N.D. N.D. +0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 N.D. N.D. N.D. -0.3
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.6 N.D. N.D. N.D. -0.4
carbon source Ying_AminoAcid20 rep B; time point 3 -0.8 N.D. N.D. N.D. -0.3
carbon source Ying_Others16 rep C; time point 3 -1.1 N.D. N.D. N.D. +0.1
carbon source Ying_OrganicAcid7 rep C; time point 3 -1.0 N.D. N.D. N.D. +0.0
carbon source Ying_AminoAcid20 rep C; time point 3 -0.9 N.D. N.D. N.D. -0.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 N.D. N.D. N.D. -0.4
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 N.D. N.D. N.D. -0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 -0.7 N.D. N.D. N.D. -0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.6 N.D. N.D. N.D. -0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.6 N.D. N.D. N.D. -0.3
carbon source Ying_Nucleobase14 rep B; time point 3 -0.8 N.D. N.D. N.D. -0.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.6 N.D. N.D. N.D. -0.3
carbon source Ying_OrganicAcid7 rep B; time point 2 -0.9 N.D. N.D. N.D. +0.1
carbon source Ying_all64 rep B; time point 2 -1.0 N.D. N.D. N.D. +0.2
carbon source Ying_all64 rep C; time point 1 -0.8 N.D. N.D. N.D. +0.2
carbon source Ying_Nucleobase14 rep A; time point 3 -0.8 N.D. N.D. N.D. +0.2
carbon source Ying_all64 rep C; time point 2 -0.9 N.D. N.D. N.D. +0.3
carbon source Ying_all64 rep A; time point 2 -0.8 N.D. N.D. N.D. +0.3
carbon source Ying_all64 rep A; time point 1 -0.7 N.D. N.D. N.D. +0.2
carbon source Ying_AminoAcid20 rep C; time point 1 -0.7 N.D. N.D. N.D. +0.3
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 N.D. N.D. N.D. +0.6
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