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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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500 nt
IAI47_11520 and IAI47_11525 are separated by 394 nucleotides
IAI47_11525 and IAI47_11530 overlap by 4 nucleotides
IAI47_11530 and IAI47_11535 are separated by 3 nucleotides
IAI47_11535 and IAI47_11540 are separated by 2 nucleotides
IAI47_11520: IAI47_11520 - type VI secretion system tip protein VgrG, at 2,436,413 to 2,437,974
_11520
IAI47_11525: IAI47_11525 - ADP-ribosylglycohydrolase family protein, at 2,438,369 to 2,439,460
_11525
IAI47_11530: IAI47_11530 - PAAR domain-containing protein, at 2,439,457 to 2,440,794
_11530
IAI47_11535: IAI47_11535 - DcrB-related protein, at 2,440,798 to 2,441,592
_11535
IAI47_11540: IAI47_11540 - type VI secretion system tip protein VgrG, at 2,441,595 to 2,443,544
_11540
Group
Condition
IAI47
_11520
IAI47
_11525
IAI47
_11530
IAI47
_11535
IAI47
_11540
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
N.D.
-0.1
-4.9
+0.3
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
N.D.
+0.1
-2.7
-0.5
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.4
N.D.
+0.3
-0.2
-1.8
stress
copper (II) chloride 2 uM, anaerobic
-0.5
N.D.
-0.1
-0.8
-1.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
N.D.
-0.5
-0.2
-1.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
N.D.
-0.4
-0.6
-1.3
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
N.D.
-0.2
-2.8
+0.3
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.0
N.D.
-0.1
-1.3
-1.0
stress
copper (II) chloride 2 uM, anaerobic
-0.6
N.D.
+0.2
-0.7
-1.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+0.1
N.D.
-0.2
-0.5
-1.8
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.3
N.D.
+0.1
-1.3
+0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.7
N.D.
-0.2
-2.2
-0.5
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.2
N.D.
+0.0
-0.4
-0.7
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
N.D.
-0.2
-2.0
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
N.D.
-0.5
+0.6
-1.7
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.8
N.D.
+0.1
-3.2
+0.5
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.0
N.D.
+0.3
+0.4
-1.2
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
N.D.
-0.1
-1.0
-0.7
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
N.D.
+0.0
-0.6
-1.4
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.0
N.D.
-0.1
+0.6
-1.6
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.7
N.D.
-0.3
-1.1
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
N.D.
-0.5
+0.4
-1.3
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.0
N.D.
-0.1
-0.7
-0.6
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
N.D.
-0.3
+0.2
-0.9
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+0.2
N.D.
-0.4
+1.0
-0.8
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
N.D.
+0.1
-1.3
+0.8
stress
Manganese (II) chloride tetrahydrate 50 uM, anaerobic
-0.8
N.D.
+0.1
+0.9
+0.9
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
N.D.
+0.2
+1.7
-0.7
stress
Uranyl Acetate Dihydrate 200 uM, aerobic
+0.1
N.D.
+0.1
+1.3
+0.8
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
N.D.
+0.2
+1.0
+1.0
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IAI47_11530
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